Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq14347 161 1e-34 seq763 138 2e-27 >seq14347 Length=195022 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| | ||||| || |||||||||||| |||||||| || ||||| || || Sbjct 105991 GTCTGGAATAACTGCTCATCGTCCCATTCTGGATGCTCTTGTTTAAGTACATCACATACT 106050 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || ||||| |||||||| || ||||| ||||||||||| Sbjct 106051 CTGTTATGTTCCCGAAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGGCCAAAG 106110 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | ||| | ||| || || | || || |||||||| | Sbjct 106111 ACCTCCTGGCCCACAGCAAACTGCAGATGTTCAGGGACGTGAGGCGGGTAGATCATCTTG 106170 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || |||| |||| Sbjct 106171 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAACTATCT 106219 Score = 136 bits (150), Expect = 6e-27 Identities = 224/323 (69%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8263 CTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCT 8322 |||| ||||| | ||| |||| | ||| | | || ||||| ||||| || || | Sbjct 104383 CTTGGTGAGCTGTTGATCTTGAACACTGAATGAAGTAAAAGGACAGCCCTTCACATTCTT 104442 Query 8323 ACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAA 8382 |||| ||||| ||||| | || | |||| ||| || || || ||||| || || Sbjct 104443 GCAGATGAGAGATTGAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAA 104502 Query 8383 GGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8442 ||||| |||||||||||| | || || || ||| || |||| || ||||| ||||| Sbjct 104503 AGTGCTAGGCTTCCAGTACTCAGGAGAACATATGGGATTACCCATAAGTCCTTTCAGGGA 104562 Query 8443 GAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8502 || || || || | || | ||| ||||||| || ||||| | || || |||||||| Sbjct 104563 AAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAAATGGCATCTGGGCGAGGCTTTTC 104622 Query 8503 CACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTC 8562 ||||| | | | |||||||||| || || | ||| || || ||||| | || Sbjct 104623 TACCAAAAGGGCAGGATACAGCTCCATGGCATCAATGTCACCATAGAGGGCTTCTAACTC 104682 Query 8563 GGCAGCGATCTCCTTTTCTCCTG 8585 ||||| || ||||| ||||||| Sbjct 104683 CGCAGCCATTTCCTTCTCTCCTG 104705 Score = 123 bits (136), Expect = 4e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 107181 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCCTATGATCTGTCTTGAA 107240 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 107241 AAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 107300 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCAC 9804 || |||| |||| | |||||| ||||||||| Sbjct 107301 AGGGATGAACTTCCTTCTTAGAAGAAATTTTTCCAC 107336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || | || || || ||||| ||| || | Sbjct 107790 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 107849 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| ||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 107850 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 107909 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||||| ||||| |||| Sbjct 107910 GGTGGGCTGTCAATCAAATGTGATCTGGCTGA 107941 >seq763 Length=1082010 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || || ||||| |||||||||||| |||| | Sbjct 938831 TCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 938772 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| ||| |||||| |||||||| || || ||||| | || | || | Sbjct 938771 AGCAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATTTCTATCATAC 938712 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || || || | | | || | ||| | ||||| Sbjct 938711 TCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGAGAAGCAGCCCCGGGTAGAACTCCA 938652 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||| || | |||||| || || || ||||| || || |||||||| |||||| Sbjct 938651 AAGCATCAATGTCTCCATATAGCTCCTCCAGTTCAGCTGCCATCTCCTTCTCTCCT 938596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716153919356800