Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25256 127 5e-24 seq14784 113 1e-19 seq2137 105 2e-17 >seq25256 Length=205224 Score = 127 bits (140), Expect = 5e-24 Identities = 172/240 (72%), Gaps = 25/240 (10%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || ||||| || || || |||||||| |||| Sbjct 40700 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTCACTGGCAAGACAATCACCCTGGAGG 40756 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| | |||||||||||||| || ||||| ||||| |||||||| || Sbjct 40757 TGGA--GCCCAGCGATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 40814 Query 178028 CCCTCCGGACCAGCA-----------AC-------GACTTATCTTCGCCGGAAAACAGCT 178069 |||||| |||||||| || | || ||||| || || || ||||| Sbjct 40815 CCCTCCCGACCAGCAGNNNCCTCCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCT 40874 Query 178070 CGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| | ||||| | ||||| ||| |||| ||||| || || ||||| || || Sbjct 40875 GGAGGATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTCGT 40934 Score = 105 bits (116), Expect = 2e-17 Identities = 97/121 (80%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 41199 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 41256 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||| Sbjct 41257 ATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGC 41316 Query 178042 A 178042 | Sbjct 41317 A 41317 >seq14784 Length=15745 Score = 113 bits (124), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || | || || |||||||| ||||| || || ||| Sbjct 8842 CAGATCTTTGTGAAGACCTTGACCAGTAAGACCATCACCCTGGAGGTAGA--GCCCAGTG 8785 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 8784 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 8725 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| ||||||||| ||||| | || || ||| Sbjct 8724 AGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACACACTCTGTCTGACTACAACA 8665 Query 178102 TCCAAAAAGAATC 178114 |||| |||| || Sbjct 8664 TCCAGGAAGAGTC 8652 >seq2137 Length=523945 Score = 105 bits (116), Expect = 2e-17 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||||||||| ||||| || ||||| || || ||||| || |||||| Sbjct 114571 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 114512 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| ||||| || ||||| ||||||||| | ||||| | || || ||| Sbjct 114511 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 114452 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || |||| |||| Sbjct 114451 ATCCAGAAGGAGTCCACCTTGCA-CTTG 114425 Score = 105 bits (116), Expect = 2e-17 Identities = 117/154 (76%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| | || || || || |||||||| |||||||| || ||| Sbjct 116004 CAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 115947 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 115946 ACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGC 115887 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 | | | ||||| ||||| || ||||| ||||| Sbjct 115886 AGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGA 115853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202487042239980