Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq20608 179 4e-40 seq1625 96.9 4e-15 >seq20608 Length=25523 Score = 179 bits (198), Expect = 4e-40 Identities = 395/586 (67%), Gaps = 7/586 (1%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || |||||||||||| | || || || || || ||||| || | |||||||| |||||| Sbjct 9182 AGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCTCTGCTAATAAGT 9241 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||||||| | || |||| |||| | ||||| | ||| ||||| | || Sbjct 9242 TCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAGAATATTGATGCA 9301 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || ||||||||||| || || || || | ||||| || | | ||||| | | Sbjct 9302 AAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACACGTTCTCCACAG 9361 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | |||| || || || | ||||| | | | Sbjct 9362 GTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGC 9421 Query 17186 ATCGTTTCTATGGCCTTAAA---TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||| | || ||||| || || |||||| |||| | || | ||| | || || || Sbjct 9422 ATCATCTCAATGGCATTGAAGAGAAATTTC-CTTTCT-TTGGA-GTCCTTAATGTAAGTG 9478 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| || || ||||||| || ||||||| |||||||| || || || || || Sbjct 9479 TCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGCCATAG 9538 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 || || ||||||| | || |||||||| | || | ||| | | ||||| || Sbjct 9539 AAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACCAAGTTTTCATTT 9598 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || || | || || || |||| | ||| || |||||| | || || Sbjct 9599 ACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATATCTCTCCTCA 9658 Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAA 17482 | || | ||||| || | || || || | | |||| || || | | |||| Sbjct 9659 AGCTCTAGGGCTTCCCAGTGCTGAATGTCCTTAGAGAGA-CCACCTCCTCAGCTGCCCAA 9717 Query 17483 AAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 || |||| | || |||||||| | ||||||||||| ||||| Sbjct 9718 AAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCATGGTATT 9763 >seq1625 Length=211188 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || ||||| ||||||||||| Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 17106 C 17106 | Sbjct 134558 C 134558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516945428244960