Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 214 2e-50
seq7358 111 2e-19
seq1625 98.7 1e-15
>seq20608
Length=25523
Score = 214 bits (236), Expect = 2e-50
Identities = 567/857 (66%), Gaps = 13/857 (2%)
Strand=Plus/Plus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || ||||||||||| || | || | || ||| | |||||||| ||||| |||||
Sbjct 8930 TTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTT 8989
Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCT 16051
|| ||| | ||| | |||| ||| | | ||| ||||| || |||||
Sbjct 8990 TCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCA 9049
Query 16052 ATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTT 16111
||||| | |||||| ||||| | || | || ||| || | || | |||
Sbjct 9050 ATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTG 9109
Query 16112 AAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGAC 16171
| || | ||||||||| ||| | | | ||||| || | ||| | || |
Sbjct 9110 AGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCGGCTCCAAA 9169
Query 16172 GGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCT 16231
||| | || |||||||||||||| | || || ||||| || |||| |||| |||
Sbjct 9170 GGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCT 9229
Query 16232 CTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAG 16291
||||| |||||||| |||||||| || | || |||| |||| | ||||| | ||||
Sbjct 9230 CTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAG 9289
Query 16292 AATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAAT 16351
||||| | ||||| || || |||||||| || || || || | ||||| || | |
Sbjct 9290 AATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACA 9349
Query 16352 CGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGT 16411
||||| | | ||||| ||||| | | |||||| | |||| || || || |
Sbjct 9350 CGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTC 9409
Query 16412 TTTATACAATCCATCGTTTCTATGGCCTTAAA---CAATTTCTCTTTTTCCTGAATATCG 16468
|||| || | |||| | || ||||| || || |||||| |||| | || ||
Sbjct 9410 TTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTC-CTTTCTTTGGA--GTCC 9466
Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528
| || || || ||||| || | ||| ||||||| || ||||||| || ||||| ||
Sbjct 9467 TTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATT 9526
Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588
|| || |||||||| || | || || | || || ||||| | ||| | ||| ||
Sbjct 9527 TGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACC 9586
Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGA 16646
| ||| ||||| || || || ||||||| ||||| || ||| || ||| | | || |
Sbjct 9587 AAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGAT--ATAA 9644
Query 16647 AATATTTTTCGTC-AGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACT 16705
||||| | || || || | || | | | ||| | | | || || || | | ||||
Sbjct 9645 AATATCTCTCCTCAAGCTCTAGGGCT-TCCCAGTGCTGAATGTCCTTAGAGAGA-CCACC 9702
Query 16706 TCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT 16765
|| || | | ||||||| |||| | || |||||||| | ||||||||||| ||||
Sbjct 9703 TCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCATGGTAT 9762
Query 16766 TGTATGGGAAATACGAC 16782
| || |||| | |||
Sbjct 9763 TCGATAAGAAAGATGAC 9779
>seq7358
Length=89575
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||||
Sbjct 30050 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 30109
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| |||||||
Sbjct 30110 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 30169
Query 16344 C 16344
|
Sbjct 30170 C 30170
>seq1625
Length=211188
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||||| ||||| || || |||||||| || || || || | ||||| ||
Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGC 134558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510821338291040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |