Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq20608 214 2e-50 seq7358 111 2e-19 seq1625 98.7 1e-15 >seq20608 Length=25523 Score = 214 bits (236), Expect = 2e-50 Identities = 567/857 (66%), Gaps = 13/857 (2%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| || | || | || ||| | |||||||| ||||| ||||| Sbjct 8930 TTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTT 8989 Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCT 16051 || ||| | ||| | |||| ||| | | ||| ||||| || ||||| Sbjct 8990 TCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCA 9049 Query 16052 ATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTT 16111 ||||| | |||||| ||||| | || | || ||| || | || | ||| Sbjct 9050 ATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTG 9109 Query 16112 AAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGAC 16171 | || | ||||||||| ||| | | | ||||| || | ||| | || | Sbjct 9110 AGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCGGCTCCAAA 9169 Query 16172 GGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCT 16231 ||| | || |||||||||||||| | || || ||||| || |||| |||| ||| Sbjct 9170 GGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCT 9229 Query 16232 CTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAG 16291 ||||| |||||||| |||||||| || | || |||| |||| | ||||| | |||| Sbjct 9230 CTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAG 9289 Query 16292 AATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAAT 16351 ||||| | ||||| || || |||||||| || || || || | ||||| || | | Sbjct 9290 AATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACA 9349 Query 16352 CGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGT 16411 ||||| | | ||||| ||||| | | |||||| | |||| || || || | Sbjct 9350 CGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTC 9409 Query 16412 TTTATACAATCCATCGTTTCTATGGCCTTAAA---CAATTTCTCTTTTTCCTGAATATCG 16468 |||| || | |||| | || ||||| || || |||||| |||| | || || Sbjct 9410 TTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTC-CTTTCTTTGGA--GTCC 9466 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | || || || ||||| || | ||| ||||||| || ||||||| || ||||| || Sbjct 9467 TTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATT 9526 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || || |||||||| || | || || | || || ||||| | ||| | ||| || Sbjct 9527 TGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACC 9586 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGA 16646 | ||| ||||| || || || ||||||| ||||| || ||| || ||| | | || | Sbjct 9587 AAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGAT--ATAA 9644 Query 16647 AATATTTTTCGTC-AGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACT 16705 ||||| | || || || | || | | | ||| | | | || || || | | |||| Sbjct 9645 AATATCTCTCCTCAAGCTCTAGGGCT-TCCCAGTGCTGAATGTCCTTAGAGAGA-CCACC 9702 Query 16706 TCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT 16765 || || | | ||||||| |||| | || |||||||| | ||||||||||| |||| Sbjct 9703 TCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCATGGTAT 9762 Query 16766 TGTATGGGAAATACGAC 16782 | || |||| | ||| Sbjct 9763 TCGATAAGAAAGATGAC 9779 >seq7358 Length=89575 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||| Sbjct 30050 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 30109 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||||| Sbjct 30110 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 30169 Query 16344 C 16344 | Sbjct 30170 C 30170 >seq1625 Length=211188 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGC 134558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510821338291040