Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq75839 123 5e-24 seq39865 116 7e-22 seq59308 107 4e-19 seq80047 100 6e-17 >seq75839 Length=248 Score = 123 bits (136), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 27713 GCACCGTCTAAATATCACGCCACCAC-CAAAGCGGGCTACCGTAACAGCAAATGGAACGG 27771 ||||| || ||||||||||| || || | ||||| |||||||| ||||||||||||| Sbjct 3 GCACCATCAAAATATCACGCGACGACTCGTCACGGGC-ACCGTAACCGCAAATGGAACGG 61 Query 27772 TGCAAGCCCGTCAGACACGCAGAGCTATCTCACAGGCCTTTGGGCACGCATACGCGCCAA 27831 |||||| |||||||||||| || |||| | ||| || || || || Sbjct 62 AAGCAGCCCGGCAGACACGCAGAAATACCTCAGTAAAGTATGGAGTAAAATTCGGGCGAA 121 Query 27832 GCTGCACCGGGAAGAAATCCGCATTTTCGGAATACGCGTCGCTGAACCGCATCACGATGG 27891 || |||||||| || | || || || || || ||||| || || || || || || || Sbjct 122 ACTTCACCGGGATGATTTACGGATCTTTGGTATTCGCGTTGCAGAGCCTCACCATGACGG 181 Query 27892 AACGCCGCACTGGCATATGCTTATGTTCATGTTGCCGGAAGA 27933 ||| |||||||||||||||||| | || ||| |||||||| Sbjct 182 AACCCCGCACTGGCATATGCTTTTCTTTATGCGCCCGGAAGA 223 >seq39865 Length=1072 Score = 116 bits (128), Expect = 7e-22 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 27503 GACTGGCGCGAGCAGAAGCGCCGCACGCGCGAATTTCTCAAGGGGCTGGATCTCGAAGAC 27562 || ||||| || || ||||| || || || ||||||||||| |||| || |||| Sbjct 886 GAATGGCGGGAACAAAAGCGGCGGACACGTGAATTTCTCAAATCTATGGAACTGAAAGAT 945 Query 27563 GAAGAAGGCAACCGCATCAGTCTGATTGAAAAATACGACGGCTCGGTC-GCTAATCCAGC 27621 || ||||| |||||| |||| |||||||| |||| | | ||| | || || ||||| || Sbjct 946 GAGGAAGGAAACCGCGTCAGCCTGATTGATAAATTCTATGGC-AGTTCAGCAAATCCGGC 1004 Query 27622 AATACGCCGCTGTGAGCTGATGGCCCGCATTCGTGGGTTTGAAAATATCTGTAATGAGCT 27681 || ||| | ||| |||||| || || | ||||||||||||||||| ||||| || Sbjct 1005 GATCCGCAGAACTGAAATGATGGTGCGGATAAGAGGGTTTGAAAATATCTGCAATGAACT 1064 Query 27682 CGGTTATG 27689 ||| |||| Sbjct 1065 CGGCTATG 1072 >seq59308 Length=399 Score = 107 bits (118), Expect = 4e-19 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21444 AACTAAAGGATTTAGTTTAACTGCATCCTCTAAATGGTCGGGTGCAAAGTGCGCATATCG 21503 ||| || ||||| | |||| ||||| | | ||| || ||||||||||| ||||| || Sbjct 281 AACCAATGGATTAAACATAACCGCATCATTAAGATGATCCGGTGCAAAGTGTGCATAACG 340 Query 21504 CATGGTCATTTTTATATCTGTATGGCCGAGTACGCGCTGCAACACCAAAATATTACCGC 21562 ||| |||||||| ||||||||||| ||||| | |||||| | ||||| ||| ||||||| Sbjct 341 CATAGTCATTTTAATATCTGTATGCCCGAGGATGCGCTGAAGCACCAGAATGTTACCGC 399 >seq80047 Length=232 Score = 100 bits (110), Expect = 6e-17 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27899 CACTGGCATATGCTTATGTTCATGTTGCCGGAAGATGTCGAGCGTGTGCGACTCATCATC 27958 ||||||||||||||| | || ||| |||||||| | | | || | ||| | Sbjct 1 CACTGGCATATGCTTTTCTTTATGCGCCCGGAAGAAGCCCCGACAGTACAGAAAATCCTG 60 Query 27959 CGAGATTATGCGTGGGAGGAAGACCACTACGAACTGAGAAGCGATAAAGCCAAAAAGGCG 28018 || || ||||| | ||||||| | ||||||||| | |||||| || || Sbjct 61 CGTGACTATGCCTATCAGGAAGATTTCCACGAACTGACCACACGTAAAGCGCTGAAAGCA 120 Query 28019 CGCTTCCATGCTGAGGCCATTGACCCGGAAAAAGGCAGTGCTACTGGCTATGTCGCTAAA 28078 || || |||||||| | || || ||||| ||||| |||||| ||||||||||| ||| Sbjct 121 CGGTTTCATGCTGAAGTTATAGATCCGGATAAAGGTTCTGCTACGGGCTATGTCGCCAAA 180 Query 28079 TACATTTCCAAAAATATCGACGGTTATGCTCTCGATGGTGAAACCGATGA 28128 ||||| || ||||| | || || || || | |||| ||||| ||||| Sbjct 181 TACATATCAAAAAACGTTGATGGGTACGCAATGGATGATGAAAAGGATGA 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97767374073104