Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_001317.1
Length=30624
Score E
Sequences producing significant alignments: (Bits) Value
seq75839 123 5e-24
seq39865 116 7e-22
seq59308 107 4e-19
seq80047 100 6e-17
>seq75839
Length=248
Score = 123 bits (136), Expect = 5e-24
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 27713 GCACCGTCTAAATATCACGCCACCAC-CAAAGCGGGCTACCGTAACAGCAAATGGAACGG 27771
||||| || ||||||||||| || || | ||||| |||||||| |||||||||||||
Sbjct 3 GCACCATCAAAATATCACGCGACGACTCGTCACGGGC-ACCGTAACCGCAAATGGAACGG 61
Query 27772 TGCAAGCCCGTCAGACACGCAGAGCTATCTCACAGGCCTTTGGGCACGCATACGCGCCAA 27831
|||||| |||||||||||| || |||| | ||| || || || ||
Sbjct 62 AAGCAGCCCGGCAGACACGCAGAAATACCTCAGTAAAGTATGGAGTAAAATTCGGGCGAA 121
Query 27832 GCTGCACCGGGAAGAAATCCGCATTTTCGGAATACGCGTCGCTGAACCGCATCACGATGG 27891
|| |||||||| || | || || || || || ||||| || || || || || || ||
Sbjct 122 ACTTCACCGGGATGATTTACGGATCTTTGGTATTCGCGTTGCAGAGCCTCACCATGACGG 181
Query 27892 AACGCCGCACTGGCATATGCTTATGTTCATGTTGCCGGAAGA 27933
||| |||||||||||||||||| | || ||| ||||||||
Sbjct 182 AACCCCGCACTGGCATATGCTTTTCTTTATGCGCCCGGAAGA 223
>seq39865
Length=1072
Score = 116 bits (128), Expect = 7e-22
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 27503 GACTGGCGCGAGCAGAAGCGCCGCACGCGCGAATTTCTCAAGGGGCTGGATCTCGAAGAC 27562
|| ||||| || || ||||| || || || ||||||||||| |||| || ||||
Sbjct 886 GAATGGCGGGAACAAAAGCGGCGGACACGTGAATTTCTCAAATCTATGGAACTGAAAGAT 945
Query 27563 GAAGAAGGCAACCGCATCAGTCTGATTGAAAAATACGACGGCTCGGTC-GCTAATCCAGC 27621
|| ||||| |||||| |||| |||||||| |||| | | ||| | || || ||||| ||
Sbjct 946 GAGGAAGGAAACCGCGTCAGCCTGATTGATAAATTCTATGGC-AGTTCAGCAAATCCGGC 1004
Query 27622 AATACGCCGCTGTGAGCTGATGGCCCGCATTCGTGGGTTTGAAAATATCTGTAATGAGCT 27681
|| ||| | ||| |||||| || || | ||||||||||||||||| ||||| ||
Sbjct 1005 GATCCGCAGAACTGAAATGATGGTGCGGATAAGAGGGTTTGAAAATATCTGCAATGAACT 1064
Query 27682 CGGTTATG 27689
||| ||||
Sbjct 1065 CGGCTATG 1072
>seq59308
Length=399
Score = 107 bits (118), Expect = 4e-19
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 21444 AACTAAAGGATTTAGTTTAACTGCATCCTCTAAATGGTCGGGTGCAAAGTGCGCATATCG 21503
||| || ||||| | |||| ||||| | | ||| || ||||||||||| ||||| ||
Sbjct 281 AACCAATGGATTAAACATAACCGCATCATTAAGATGATCCGGTGCAAAGTGTGCATAACG 340
Query 21504 CATGGTCATTTTTATATCTGTATGGCCGAGTACGCGCTGCAACACCAAAATATTACCGC 21562
||| |||||||| ||||||||||| ||||| | |||||| | ||||| ||| |||||||
Sbjct 341 CATAGTCATTTTAATATCTGTATGCCCGAGGATGCGCTGAAGCACCAGAATGTTACCGC 399
>seq80047
Length=232
Score = 100 bits (110), Expect = 6e-17
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27899 CACTGGCATATGCTTATGTTCATGTTGCCGGAAGATGTCGAGCGTGTGCGACTCATCATC 27958
||||||||||||||| | || ||| |||||||| | | | || | ||| |
Sbjct 1 CACTGGCATATGCTTTTCTTTATGCGCCCGGAAGAAGCCCCGACAGTACAGAAAATCCTG 60
Query 27959 CGAGATTATGCGTGGGAGGAAGACCACTACGAACTGAGAAGCGATAAAGCCAAAAAGGCG 28018
|| || ||||| | ||||||| | ||||||||| | |||||| || ||
Sbjct 61 CGTGACTATGCCTATCAGGAAGATTTCCACGAACTGACCACACGTAAAGCGCTGAAAGCA 120
Query 28019 CGCTTCCATGCTGAGGCCATTGACCCGGAAAAAGGCAGTGCTACTGGCTATGTCGCTAAA 28078
|| || |||||||| | || || ||||| ||||| |||||| ||||||||||| |||
Sbjct 121 CGGTTTCATGCTGAAGTTATAGATCCGGATAAAGGTTCTGCTACGGGCTATGTCGCCAAA 180
Query 28079 TACATTTCCAAAAATATCGACGGTTATGCTCTCGATGGTGAAACCGATGA 28128
||||| || ||||| | || || || || | |||| ||||| |||||
Sbjct 181 TACATATCAAAAAACGTTGATGGGTACGCAATGGATGATGAAAAGGATGA 230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97767374073104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |