Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq506 172 4e-38 seq18694 107 1e-18 seq8905 89.7 4e-13 >seq506 Length=326277 Score = 172 bits (190), Expect = 4e-38 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 26948 GTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAA 27007 ||| |||||||| || || || |||||||| |||| ||| ||||||||||| |||| || Sbjct 133562 GTGGACAATGGGCGTGACACAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGCCGGAA 133621 Query 27008 TGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGAC 27067 || | |||||| | || || | | |||| || || |||||||| ||||| ||||| Sbjct 133622 GGAGTGGGGGCAGTGCCGAGGCTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGGGAC 133681 Query 27068 TGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTT 27127 |||||||||| || |||||| ||||| ||||| | || || || |||| ||| ||||| Sbjct 133682 GGAGTTCATGTCGTGGTCTACCTTCCCTTCAGCGCTGACGCAGCCGAAGTGGCGGCACTT 133741 Query 27128 TGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||| ||||||||||| ||||| || | || || ||||| Sbjct 133742 GGCCTCCCAGATCACAGAGGGGTATCTCTCCGGGTCCTCGTTGCG 133786 >seq18694 Length=30974 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | ||||||||| |||||||| || ||||| ||||| Sbjct 25091 CTTGAGTTCTCTACTGAGAACTATGTTAATTCTGTTCTTTAAAGGTCGATTCTTTTCAGG 25032 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 25031 AAGGGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 24983 >seq8905 Length=76272 Score = 89.7 bits (98), Expect = 4e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 4166 TATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCT 4225 |||| | |||||| | ||| || | | | ||||||||||||||||||| |||||||| | Sbjct 39845 TATAAAAAGAACTGCTTCCTATGAGCTAAACCATGTCTACTTTATTTGTTAATTCTGATT 39786 Query 4226 GTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | || |||| ||||| |||||||| | | | || || | ||||| ||||| |||||| Sbjct 39785 GCTCAATAAG-TTTAAGGCATCATCCACATTTTTGGCAAGAAAATCAGCTCCTTGTGGA 39728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360842748169772