Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20608 304 2e-77 seq2665 131 2e-25 seq1625 114 2e-20 seq7358 111 2e-19 >seq20608 Length=25523 Score = 304 bits (336), Expect = 2e-77 Identities = 428/599 (71%), Gaps = 4/599 (1%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 |||||||||||| || || || || ||||||| ||| | ||||| ||||| | ||| Sbjct 9185 TGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCA 9244 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| || |||| || || | || || ||||| ||||| || ||||| Sbjct 9245 TTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAA 9304 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || ||||||||||| |||||||| || | |||||||| | | | ||||||| | | Sbjct 9305 GAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTA 9364 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| ||||| ||||||||| |||||||| ||||||| |||||| Sbjct 9365 GCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATC 9424 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 |||| || ||||| |||||| | || |||| || || |||| || || ||||| Sbjct 9425 ATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATG 9484 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | |||||| ||||||| ||| | |||||||| ||||| ||||| || || |||||||| Sbjct 9485 AGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 9544 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 || || |||||||| |||||| | ||| | || | || |||||||| ||||| Sbjct 9545 AGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATG 9604 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 || ||||| | |||||| || |||| ||||| |||||||||| | || || | | Sbjct 9605 CCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATATCTCTCCTCAAGCTCT 9664 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 || | ||| | | || || ||||| | | |||| || || ||| |||||| || Sbjct 9665 AGGGCTTCCCAGTGCTGAATGTCCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAA 9723 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| || |||||||| | ||| || ||||| |||| || |||| || ||||| Sbjct 9724 GCCTCCATTTTCTTATACATCTGCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq2665 Length=168205 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| | Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 80587 CTGTTTCTTATACCATA 80603 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || || || || | | Sbjct 89086 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 89145 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 89146 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 89205 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 89206 AGGCTCCAGGTAAAT 89220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 99856 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 99915 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | |||||| | || || ||| |||| || | || ||| || | Sbjct 99916 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 99975 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| || || || || ||||| Sbjct 99976 GTTCCACAGTGGTGACCCCACTGTATAAGCCCTGAATTACTTTCAT 100021 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| | | | || || |||||||| || || || || || || | Sbjct 84561 CATAGGTTTCATATGGGTCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 84620 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||| | |||||| | || || || | || ||||| |||| Sbjct 84621 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 84680 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 84681 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGGTGGC 84740 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 84741 GTTTATTTGA 84750 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||||| |||||| || |||||||| ||||||||||| | ||||| |||||| |||||| Sbjct 84970 TCTGGAACAGGATAGTAGTTAATATCAATAATTTTATTCAAGTTTCGGACAATGACTTTG 85029 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || ||| ||| ||| || ||| | | | ||| |||| |||| Sbjct 85030 GTGACGTCAGCCAATTTCTTAAAGTCATATGTGTGTTCTGGTGTGACATACATATTCAGG 85089 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || |||| |||||||| || |||| Sbjct 85090 GCCAGGGAAGCCAAGTTACAAACAGCAACCT 85120 >seq1625 Length=211188 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 24277 C 24277 | Sbjct 134558 C 134558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || |||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 136424 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 136483 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 136484 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 136528 >seq7358 Length=89575 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||| || Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171 Query 24279 ATAAGTCTTTCTCC 24292 | | ||||||||| Sbjct 30172 ACCACTCTTTCTCC 30185 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 43521 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGGG 43580 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 43581 TACTGGATTGGAAAGATGACAAATC 43605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593033090746560