Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq24084 334 9e-87 seq8719 170 2e-37 seq3181 165 1e-35 >seq24084 Length=17035 Score = 334 bits (370), Expect = 9e-87 Identities = 593/858 (69%), Gaps = 9/858 (1%) Strand=Plus/Minus Query 176387 TGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAA 176446 |||| || |||||||| | | ||| || | || ||| || ||||| || | || | Sbjct 9219 TGGGCTGCTGGGCAATGTGGTGGTGCTGGTGATCCTCACAAAATACAAGAGGCTCCGGAT 9160 Query 176447 CCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTT 176506 | || ||||| | ||| | || ||||| || ||||||||||| ||||| || ||| | Sbjct 9159 TGTGACCAACATCTACCTGCTTAATTTGGCGATTTCTGACTTGCTCTTTCTGTTCACTCT 9100 Query 176507 GCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTG 176566 ||| || ||||| |||||| | || || | |||| ||| ||||| | |||| Sbjct 9099 GCCGTTCTGGATTCACTATGT-GGCGTGGA--ATGAGTGGGTCTTTGGCCACCGCGTGTG 9043 Query 176567 TAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCT 176626 ||| | ||| || | | ||| || |||||||| || |||| | ||||||||| Sbjct 9042 TAAGTTCCTCTCAGGGCTTTATTATCTGGGCTTGTACAGCGAGATCTTCTTCATCATCCT 8983 Query 176627 GCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAAC 176686 ||| || ||||| |||| || || | ||| | || || || | | |||| Sbjct 8982 GCTGACGATAGACCGGTACCTGGCCATCGTCCACGCCGTGTTCGCCCTTCGAACCCGAAC 8923 Query 176687 AGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCT 176746 |||| | |||||| | ||| | | | || ||| ||||||||| | |||| Sbjct 8922 TATAACATTTGGCATGGCAACCAGCATCTTCACATGGGGCCTGGCAGGGCTAGCAGCCCT 8863 Query 176747 CCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTA 176806 ||| |||||| |||| || | |||||| || ||| | | | ||| |||| Sbjct 8862 CCCGGAATTTATCTTCCACGAGTCCCAAGAGGATTTTGGAAAGCCTGTGTGCAGTCCTCT 8803 Query 176807 CTACCCAGAGA-TGTCTACAAATGTTTGGAGGCGCGCCCACGT--TGCAAAGGTGATTAT 176863 |||||||| | || | ||| |||| || |||||| ||| || ||| ||| Sbjct 8802 TTACCCAGAAAATGAAGA-AAACACCTGGAAGCATTTCCACGTGCTGCGAA--TGAATAT 8746 Query 176864 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 176923 || ||||| ||||||||||| |||||||||||||||||| | ||| |||| || Sbjct 8745 CTTGGGTCTCGCCCTGCCTCTGCTCGTTATGGCTGTCTGCTACTCAGGAATCATCAAAAC 8686 Query 176924 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 176983 ||| |||| | ||||| || |||||||||||||| ||| ||||||| ||||||||||| Sbjct 8685 GCTGCTGAGATGTCCCAGTAAAAAGAAGTACAAGGCTATCCGGCTCATTTTTGTCATCAT 8626 Query 176984 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043 ||||| || ||| |||| |||||||| |||||| | |||||||| || ||| ||||| Sbjct 8625 GGTGGTCTTTTTCATTTTCTGGACACCTTACAACCTGGTTCTCCTTCTCTCTGTTTTTCA 8566 Query 177044 CGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGAT 177103 | ||| | ||| | | |||| || ||||| | ||||| |||| ||||| | Sbjct 8565 AACGACCTTCCTTGAGACCGACTGTGAATGGAGCAAGCAGCTGGACCTGGCCATGCTGGT 8506 Query 177104 AACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGG 177163 ||| | | |||||| | ||||| || ||||||| ||||||||||| || || || Sbjct 8505 GACAGAGGTGATCGCCTACTCGCACTGCTGTGTCAACCCCGTGATCTACGCCTTTGTCGG 8446 Query 177164 GGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTG 177223 |||||||| || |||||| |||||| ||| ||| | |||||||||||||| | Sbjct 8445 TGAGAAGTTCCAAAAACACCTTCGCCACTTTTTCTACAGGCATGTGGCCATCTACCTGGG 8386 Query 177224 CAAGTACATCCCCTTCCT 177241 ||| |||||||| ||||| Sbjct 8385 CAAATACATCCCATTCCT 8368 Score = 334 bits (370), Expect = 9e-87 Identities = 593/858 (69%), Gaps = 9/858 (1%) Strand=Plus/Minus Query 9501 TGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAA 9560 |||| || |||||||| | | ||| || | || ||| || ||||| || | || | Sbjct 9219 TGGGCTGCTGGGCAATGTGGTGGTGCTGGTGATCCTCACAAAATACAAGAGGCTCCGGAT 9160 Query 9561 CCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTT 9620 | || ||||| | ||| | || ||||| || ||||||||||| ||||| || ||| | Sbjct 9159 TGTGACCAACATCTACCTGCTTAATTTGGCGATTTCTGACTTGCTCTTTCTGTTCACTCT 9100 Query 9621 GCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTG 9680 ||| || ||||| |||||| | || || | |||| ||| ||||| | |||| Sbjct 9099 GCCGTTCTGGATTCACTATGT-GGCGTGGA--ATGAGTGGGTCTTTGGCCACCGCGTGTG 9043 Query 9681 TAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCT 9740 ||| | ||| || | | ||| || |||||||| || |||| | ||||||||| Sbjct 9042 TAAGTTCCTCTCAGGGCTTTATTATCTGGGCTTGTACAGCGAGATCTTCTTCATCATCCT 8983 Query 9741 GCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAAC 9800 ||| || ||||| |||| || || | ||| | || || || | | |||| Sbjct 8982 GCTGACGATAGACCGGTACCTGGCCATCGTCCACGCCGTGTTCGCCCTTCGAACCCGAAC 8923 Query 9801 AGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCT 9860 |||| | |||||| | ||| | | | || ||| ||||||||| | |||| Sbjct 8922 TATAACATTTGGCATGGCAACCAGCATCTTCACATGGGGCCTGGCAGGGCTAGCAGCCCT 8863 Query 9861 CCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTA 9920 ||| |||||| |||| || | |||||| || ||| | | | ||| |||| Sbjct 8862 CCCGGAATTTATCTTCCACGAGTCCCAAGAGGATTTTGGAAAGCCTGTGTGCAGTCCTCT 8803 Query 9921 CTACCCAGAGA-TGTCTACAAATGTTTGGAGGCGCGCCCACGT--TGCAAAGGTGATTAT 9977 |||||||| | || | ||| |||| || |||||| ||| || ||| ||| Sbjct 8802 TTACCCAGAAAATGAAGA-AAACACCTGGAAGCATTTCCACGTGCTGCGAA--TGAATAT 8746 Query 9978 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 10037 || ||||| ||||||||||| |||||||||||||||||| | ||| |||| || Sbjct 8745 CTTGGGTCTCGCCCTGCCTCTGCTCGTTATGGCTGTCTGCTACTCAGGAATCATCAAAAC 8686 Query 10038 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 10097 ||| |||| | ||||| || |||||||||||||| ||| ||||||| ||||||||||| Sbjct 8685 GCTGCTGAGATGTCCCAGTAAAAAGAAGTACAAGGCTATCCGGCTCATTTTTGTCATCAT 8626 Query 10098 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157 ||||| || ||| |||| |||||||| |||||| | |||||||| || ||| ||||| Sbjct 8625 GGTGGTCTTTTTCATTTTCTGGACACCTTACAACCTGGTTCTCCTTCTCTCTGTTTTTCA 8566 Query 10158 CGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGAT 10217 | ||| | ||| | | |||| || ||||| | ||||| |||| ||||| | Sbjct 8565 AACGACCTTCCTTGAGACCGACTGTGAATGGAGCAAGCAGCTGGACCTGGCCATGCTGGT 8506 Query 10218 AACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGG 10277 ||| | | |||||| | ||||| || ||||||| ||||||||||| || || || Sbjct 8505 GACAGAGGTGATCGCCTACTCGCACTGCTGTGTCAACCCCGTGATCTACGCCTTTGTCGG 8446 Query 10278 GGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTG 10337 |||||||| || |||||| |||||| ||| ||| | |||||||||||||| | Sbjct 8445 TGAGAAGTTCCAAAAACACCTTCGCCACTTTTTCTACAGGCATGTGGCCATCTACCTGGG 8386 Query 10338 CAAGTACATCCCCTTCCT 10355 ||| |||||||| ||||| Sbjct 8385 CAAATACATCCCATTCCT 8368 >seq8719 Length=77844 Score = 170 bits (188), Expect = 2e-37 Identities = 135/162 (83%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 22558 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 22499 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||||||||| || | |||||||||||||||||| ||||| || | || Sbjct 22498 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 22439 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||||| ||| ||||| || || ||||||||| Sbjct 22438 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATG 22397 >seq3181 Length=153930 Score = 165 bits (182), Expect = 1e-35 Identities = 131/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||||||| |||||| || || ||||||||||||||||||||||| | || Sbjct 30289 CAGCGTCGCAGCCTCAGCCTGAGAGTCTTCAGCTTTTCCCCCAGGGAGTTCACATGCTCG 30230 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | |||||||||||| ||| |||||||||| |||| ||||||||||||| Sbjct 30229 TTGAT---GTCTGGGCTGTGGTTCTCAGCCAGGGGCATCACTTCCTTCAGGTAAAACTGG 30173 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 30172 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 30136 Score = 118 bits (130), Expect = 1e-21 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||||||||||| | | ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 32482 TCAGTTTTTCATTCTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTC 32423 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||||| || ||||||| Sbjct 32422 ACTCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 32388 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| | ||| ||| |||||||||| || | |||||| ||||||||||||||||||| Sbjct 28935 AAAGAAAGCCTTCACCTTGCTGAAGGCAGCTCGGAGCTCTCGGAGCATGTGGGGCAGGCT 28876 Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGACTCACTGTCATATTTGTTGTCGGCCCACA 138415 || || || || || |||| || | |||| |||| | || | ||| | || Sbjct 28875 GGCTGG-AAAGTGGGTGCAGCTGTTCTCAGATGGGGTGTCCTGGTTTAGGCTGGCTCCCA 28817 Query 138416 CCCCGGCCAGGAGAACCAGGCAACACAGCAGC 138447 |||| |||| ||| ||||||||||| |||||| Sbjct 28816 CCCCAGCCAAGAGGACCAGGCAACATAGCAGC 28785 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||| || Sbjct 31325 CTTACTGAAGGCGGTCTTCACCTGCTCCACGGCCTTGCTCCTGTTCTCGCAGGGCAGAAA 31266 Query 138075 TC 138076 || Sbjct 31265 TC 31264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589392517438880