Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7134 123 2e-23 seq4400 122 7e-23 seq66 96.9 3e-15 >seq7134 Length=91468 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | ||| || || |||| Sbjct 86514 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 86455 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| ||| | ||| || || || Sbjct 86454 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCT 86395 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 86394 TGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86335 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || ||||| |||||||| || || || |||||| Sbjct 86334 TTACCGGTCAACGTTTTTACGAAGATCTGCATT 86302 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||||| || ||||| ||||| | ||| || || |||| Sbjct 86742 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 86683 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 86682 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 86623 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 86622 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86563 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || || || || || ||||| Sbjct 86562 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||||| || ||||| ||||| | ||| || || |||| Sbjct 86970 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 86911 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 86910 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 86851 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 86850 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86791 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || || || || || ||||| Sbjct 86790 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | ||| || || |||| Sbjct 87198 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 87139 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 87138 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 87079 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 87078 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 87019 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || || || || || ||||| Sbjct 87018 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| |||||||| || || ||||| ||||| | ||| || | | || Sbjct 87427 GAGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATC 87368 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 87367 TTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 87308 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | ||| || |||| ||||||| |||| ||| ||||| Sbjct 87307 ATGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 87248 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||||| || || || || || || ||||| Sbjct 87247 CTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 >seq4400 Length=129001 Score = 122 bits (134), Expect = 7e-23 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | |||| || ||||| || || ||||| || || | | Sbjct 40120 CCCCTC--AGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGA 40063 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | ||||||||||| ||||| ||| | || || ||||||||||| || | Sbjct 40062 GAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGA 40003 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | ||| ||||| | ||||||| | Sbjct 40002 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCT 39943 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || || |||||||||| Sbjct 39942 CCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTTTGA 39892 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||| | |||| || ||||| || || ||||| || || | | Sbjct 40348 CCCCTC--AGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGA 40291 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | ||||||||||| ||||| ||| | || || ||||||||||| || | Sbjct 40290 GAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGA 40231 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | ||| ||||| | ||||||| | Sbjct 40230 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCT 40171 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 40170 CCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| || ||||| || || ||||| || || | || || || | ||| Sbjct 40564 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40505 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | |||||| || || Sbjct 40504 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCC 40445 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| ||||| | ||||||| |||| ||| |||||| Sbjct 40444 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 40385 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 40384 TTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 >seq66 Length=542294 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || || ||||||| | || ||||| ||||| ||| || || | || Sbjct 261609 GAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAACAGAGTGTGTCCATC 261668 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||| ||| || || ||| | || | ||||||||||| ||| | ||| ||||| || Sbjct 261669 TTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 261728 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | ||| || |||| ||||||| |||| ||| ||||| Sbjct 261729 TTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 261788 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||||| | || || ||||| || ||||| Sbjct 261789 CTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421781768940752