Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq20608 163 3e-35 seq7134 147 2e-30 seq4400 145 8e-30 seq66 89.7 5e-13 >seq20608 Length=25523 Score = 163 bits (180), Expect = 3e-35 Identities = 415/619 (67%), Gaps = 13/619 (2%) Strand=Plus/Minus Query 116601 GCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCG 116660 |||| || || || || | || |||||| || || |||| ||||| || || | Sbjct 9787 GCCGTTTTGTCATCTTTCTTATCGAATACCATGATATTTGGCAGATGTATAAGAAAATGG 9728 Query 116661 AGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG-AGCGACTGGGA- 116718 |||| || || ||| | | |||||||||| | | || ||||||| ||| ||||||| Sbjct 9727 AGGCTTCCTTTTGGGCAGCTGAGGAGGTGGTC-TCTCTAAGGACATTCAGC-ACTGGGAA 9670 Query 116719 GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAG 116778 || || || | | ||| | |||| || || || ||||| || || || | || Sbjct 9669 GCCCTAGAGCTTGAG-GAGAGATATTTTATATCTCATGTTCTGGCTTTCTTTGCAACAAG 9611 Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 || ||||| || || || || |||| ||| |||| || || || ||| | | || Sbjct 9610 TGATGGCATAGTAAATGAAAACTTGGTGGAGTGTTTTAGCCAAGAAGTTCAGATTACAGA 9551 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 || | || ||||| ||||| || || |||||||| ||| | | || ||||||| || Sbjct 9550 AGCCCTCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACGTTCTGAAATGT-TTA 9492 Query 116899 GAC-CCTCATCGACACGTACGTGC-GCTCTTCGGAGGA--GAAGCTCCGTTTGTTGAACG 116954 | | |||||| ||||| ||| | | || | || | ||| | | | || || | Sbjct 9491 GTCTCCTCATTGACACTTACATTAAGGACTCCAAAGAAAGGAAATTTC---TCTTCAATG 9435 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 |||| |||| |||||| | || || ||||||| || ||||| ||| ||||| | | Sbjct 9434 CCATTGAGATGATGCCTCGTGTAAAGAAGAAGGCAGATTGGGCTTTGCCTTGGATTGGAG 9375 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 || |||||| ||| || || || |||| ||||| || | || || || |||||| Sbjct 9374 ACAAAGAGGCTACCTGTGGAGAACGTGTGGTAGCCTTTGCTACGGTGGAAGGAATCTTCT 9315 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 |||| || ||| || | ||||| ||||||||||| | || ||| |||| || || | Sbjct 9314 TTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAATCAAGGACTCGTGCCTGGTCTCA 9255 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194 | || ||| || || || ||| || | ||| | || || ||||||||||| | Sbjct 9254 CATTTTCCAATGAACTTATTAGCAGAGATAAAGGTTTACACTGTGACTTTGCCTGCCCGA 9195 Query 117195 TGTTCAAGCATTTGGTGCA 117213 |||| || || || |||| Sbjct 9194 TGTTTAAACACCTGCTGCA 9176 >seq7134 Length=91468 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||||||| | || || || ||||||||| | || || || ||| Sbjct 86302 AATGCAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 86361 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | || ||||||||||||||| | |||| Sbjct 86362 TGACACCATCGAGAACG-TCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACC 86420 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| || || ||||||||||| |||| ||||| || ||||||| Sbjct 86421 AGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACA 86480 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| ||| |||| ||||| || || |||| | || |||||| Sbjct 86481 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGCGGC 86530 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 86531 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 86590 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 86591 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 86650 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || |||||||| |||| ||||| || ||||||||| Sbjct 86651 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 86710 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || || |||| | || |||||| Sbjct 86711 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGCGGC 86758 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 86759 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 86818 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 86819 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 86878 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || |||||||| |||| ||||| || ||||||||| Sbjct 86879 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 86938 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || || |||| | || |||||| Sbjct 86939 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGCGGC 86986 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 86987 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 87046 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 87047 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 87106 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || ||||||||||| |||| ||||| || ||||||||| Sbjct 87107 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 87166 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| || || |||| | || |||||| Sbjct 87167 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGCGGC 87214 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 87215 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 87274 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || |||||||||||| | |||||| Sbjct 87275 GACACCATCGAGAATGTCAAGGCCAAGATCCATGATAAGGAGGGCATCCCCCCAGACCAG 87334 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||| || ||||||||| Sbjct 87335 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 87394 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| |||| | || | ||||||||||| || Sbjct 87395 ATCCAGAAAGAGTCCACCTTGCACTTGGTCCTCCGCTTGAGGGGAGG 87441 >seq4400 Length=129001 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 40353 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40412 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | || ||||| |||||||| | ||||| Sbjct 40413 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCA 40471 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| ||| ||| ||||| Sbjct 40472 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAA 40531 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || ||||| || ||| |||| ||||||| ||| Sbjct 40532 CATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGGGGTGGC 40580 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || ||||| ||||| ||||||||| | || || || || Sbjct 39894 AAAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 39953 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | | | |||| | |||| || || | || ||||| |||||||| | || Sbjct 39954 AGCGATACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGA 40012 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | ||||| ||| ||| || Sbjct 40013 CCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTA 40072 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| | || ||||| || ||| | || ||||||| || Sbjct 40073 CAACATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCTGAGGGGTGG 40123 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 40125 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40184 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | || ||||| |||||||| | ||||| Sbjct 40185 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCA 40243 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| ||| ||| ||||| Sbjct 40244 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAA 40303 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || ||||| || ||| | || ||||||| || Sbjct 40304 CATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCTGAGGGGTGG 40351 >seq66 Length=542294 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 261821 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 261762 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || |||||||||||| | |||||| Sbjct 261761 GACACCATCGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCAG 261702 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || ||| |||| || | | ||| || ||||||||| Sbjct 261701 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGACACACTCTGTTTGACTACAAC 261642 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| | || |||| | || | || | ||||||||||| || Sbjct 261641 ATCCAGGAAAAGTCCACCTTTCACTTGGTCCTCCGCTTGAGGGGAGG 261595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514621726054720