Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_002166.1
Length=40751
Score E
Sequences producing significant alignments: (Bits) Value
seq42976 136 1e-27
seq83063 118 3e-22
seq62219 80.6 7e-11
>seq42976
Length=315
Score = 136 bits (150), Expect = 1e-27
Identities = 213/305 (70%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 14221 TCTGTAGCGAAGGCAAAAATCCTCGTTGCGCTTGGGGAAGGTGAGTTTGCAGGGCAGCTC 14280
|| || || || || ||| | || | || || |||||||| || ||||| ||| ||||
Sbjct 3 TCCGTTGCCAAAGCGAAATTGCTGATCGCCCTCGGGGAAGGGGAATTTGCCGGGGAGCTG 62
Query 14281 ACCGGCAAAGATATCTACCTGGACGGAACAGCGCTGGAGAATGCTGACGGCTCCCAAAAC 14340
||||| ||| |||||| |||||||| ||| |||| |||||||||||| || |||||
Sbjct 63 ACCGGGAAAAATATCTTTCTGGACGGTACACCGCTACTGAATGCTGACGGATCAGAAAAC 122
Query 14341 TTCAGCGGGGTAACGTGGGAGTTTCGCGCGGGAACTCAGGCGCAAAAATATATTCAGGGT 14400
|| ||||| |||||| | || | |||||||||||||||| || ||||||||
Sbjct 123 TTTCCTGGGGTGGTGTGGGAATACCGTCCCGGAACTCAGGCGCAAATCTACATTCAGGGG 182
Query 14401 ATTCCCGGTACCGAAAACGAGATCAGCGTAGGAACTGAGGTATCAAGTGCCACAGCCTGG 14460
|| || | | || || || || | ||| || || || || ||| | |||
Sbjct 183 ATGCCGGCGGCGGAGAATGAAATTACCGTTGGTACCACTGTGCAGAGCAGCACGCCGTGG 242
Query 14461 ACGCGCACGTTTACCAATACGCAGCTTTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCG 14520
||| | || |||||| ||||||| || || | ||| | || || |||||||| ||
Sbjct 243 GCGCATGCATTCACCAATCCGCAGCTGTCCGCTATCCGCGTCCGCCTGAAATGGCCGTCC 302
Query 14521 CTTTT 14525
|| ||
Sbjct 303 CTGTT 307
>seq83063
Length=222
Score = 118 bits (130), Expect = 3e-22
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 12023 CATGCTGCAGCTGAATATCCTCGTGAGTGCTGCGGTGTGGTGGCACAGAAGAGCCGGGTA 12082
||||| | | ||||||||| |||||||||||||| ||| | || || || ||| ||
Sbjct 35 CATGCAGAACGTGAATATCCCCGTGAGTGCTGCGGGGTGATCGCGCAAAAATCCCGTGTG 94
Query 12083 GAGAAATATTTTCCATGTCGTAACCTCGCTACCGAGCCGACAGAACATTTTCACCTGTCG 12142
| ||||||||| || ||||| || |||| ||| ||||||||| | | |||
Sbjct 95 GTGAAATATTTCCCCTGTCGCAATATCGCGGTTTCTCCGGAGGAACATTTTGTCTTATCG 154
Query 12143 CCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACAGTCAC 12202
|| ||||| || || ||||| || || ||||| |||||||||| || |||||||||||
Sbjct 155 CCGGAAGATTACGCCGCTGCGGATGATTGGGGAACGGTGATCGGTATTGTTCACAGTCAT 214
Query 12203 CCTGACGC 12210
|| || ||
Sbjct 215 CCGGATGC 222
>seq62219
Length=352
Score = 80.6 bits (88), Expect = 7e-11
Identities = 103/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 28585 GTTTTCCCGTATACAAACACATAAATGCCATCGCCATCAAAACAGGTTATGGATACATCA 28644
|||| ||||| ||||| ||||| | |||||||||||||| | ||||| ||||||
Sbjct 259 GTTTGTCCGTAGACAAAAACATATACACCATCGCCATCAAAGTAATTTATGTGGACATCA 200
Query 28645 ACAAAGATCTCATCTCCCGGATTGATGGTTCCCTCCATGCTGTCACCGCGAACCGTGATG 28704
| ||| | | || || ||||| || || || | ||| || |||||| ||| |||||
Sbjct 199 ATAAAAACTTGGTCACCAGGATTAATTGTACCTTGCATACTATCACCGGCAACAGTGATC 140
Query 28705 ACTTTTACGCTTTCCTGTGGCC 28726
| ||||| | |||| |||||
Sbjct 139 ATTTTTATGTTTTCACTTGGCC 118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130138072995432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |