Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq42976 136 1e-27 seq83063 118 3e-22 seq62219 80.6 7e-11 >seq42976 Length=315 Score = 136 bits (150), Expect = 1e-27 Identities = 213/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 14221 TCTGTAGCGAAGGCAAAAATCCTCGTTGCGCTTGGGGAAGGTGAGTTTGCAGGGCAGCTC 14280 || || || || || ||| | || | || || |||||||| || ||||| ||| |||| Sbjct 3 TCCGTTGCCAAAGCGAAATTGCTGATCGCCCTCGGGGAAGGGGAATTTGCCGGGGAGCTG 62 Query 14281 ACCGGCAAAGATATCTACCTGGACGGAACAGCGCTGGAGAATGCTGACGGCTCCCAAAAC 14340 ||||| ||| |||||| |||||||| ||| |||| |||||||||||| || ||||| Sbjct 63 ACCGGGAAAAATATCTTTCTGGACGGTACACCGCTACTGAATGCTGACGGATCAGAAAAC 122 Query 14341 TTCAGCGGGGTAACGTGGGAGTTTCGCGCGGGAACTCAGGCGCAAAAATATATTCAGGGT 14400 || ||||| |||||| | || | |||||||||||||||| || |||||||| Sbjct 123 TTTCCTGGGGTGGTGTGGGAATACCGTCCCGGAACTCAGGCGCAAATCTACATTCAGGGG 182 Query 14401 ATTCCCGGTACCGAAAACGAGATCAGCGTAGGAACTGAGGTATCAAGTGCCACAGCCTGG 14460 || || | | || || || || | ||| || || || || ||| | ||| Sbjct 183 ATGCCGGCGGCGGAGAATGAAATTACCGTTGGTACCACTGTGCAGAGCAGCACGCCGTGG 242 Query 14461 ACGCGCACGTTTACCAATACGCAGCTTTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCG 14520 ||| | || |||||| ||||||| || || | ||| | || || |||||||| || Sbjct 243 GCGCATGCATTCACCAATCCGCAGCTGTCCGCTATCCGCGTCCGCCTGAAATGGCCGTCC 302 Query 14521 CTTTT 14525 || || Sbjct 303 CTGTT 307 >seq83063 Length=222 Score = 118 bits (130), Expect = 3e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 12023 CATGCTGCAGCTGAATATCCTCGTGAGTGCTGCGGTGTGGTGGCACAGAAGAGCCGGGTA 12082 ||||| | | ||||||||| |||||||||||||| ||| | || || || ||| || Sbjct 35 CATGCAGAACGTGAATATCCCCGTGAGTGCTGCGGGGTGATCGCGCAAAAATCCCGTGTG 94 Query 12083 GAGAAATATTTTCCATGTCGTAACCTCGCTACCGAGCCGACAGAACATTTTCACCTGTCG 12142 | ||||||||| || ||||| || |||| ||| ||||||||| | | ||| Sbjct 95 GTGAAATATTTCCCCTGTCGCAATATCGCGGTTTCTCCGGAGGAACATTTTGTCTTATCG 154 Query 12143 CCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACAGTCAC 12202 || ||||| || || ||||| || || ||||| |||||||||| || ||||||||||| Sbjct 155 CCGGAAGATTACGCCGCTGCGGATGATTGGGGAACGGTGATCGGTATTGTTCACAGTCAT 214 Query 12203 CCTGACGC 12210 || || || Sbjct 215 CCGGATGC 222 >seq62219 Length=352 Score = 80.6 bits (88), Expect = 7e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 28585 GTTTTCCCGTATACAAACACATAAATGCCATCGCCATCAAAACAGGTTATGGATACATCA 28644 |||| ||||| ||||| ||||| | |||||||||||||| | ||||| |||||| Sbjct 259 GTTTGTCCGTAGACAAAAACATATACACCATCGCCATCAAAGTAATTTATGTGGACATCA 200 Query 28645 ACAAAGATCTCATCTCCCGGATTGATGGTTCCCTCCATGCTGTCACCGCGAACCGTGATG 28704 | ||| | | || || ||||| || || || | ||| || |||||| ||| ||||| Sbjct 199 ATAAAAACTTGGTCACCAGGATTAATTGTACCTTGCATACTATCACCGGCAACAGTGATC 140 Query 28705 ACTTTTACGCTTTCCTGTGGCC 28726 | ||||| | |||| ||||| Sbjct 139 ATTTTTATGTTTTCACTTGGCC 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130138072995432