Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq37096 107 6e-19 seq40015 95.1 4e-15 seq57556 91.5 4e-14 >seq37096 Length=1890 Score = 107 bits (118), Expect = 6e-19 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 23946 AGATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGA 24005 ||| |||||||||| ||| |||||||| |||||||||| |||||||| ||||| ||||| Sbjct 893 AGAAAGAAATAGCTATTCGAAAACTGACAATGATGCAACCTTTATGAGGATGAAAGAAGA 952 Query 24006 CCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACA 24047 ||||||| ||||| ||| | ||||||||||| || |||| Sbjct 953 CCATATGCTTAATGGACAATTAAAGCCAGGATATAACATACA 994 >seq40015 Length=1056 Score = 95.1 bits (104), Expect = 4e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 23947 GATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGAC 24006 ||||||||||| ||||||||||| ||| ||| |||||||||||| | ||||| || || Sbjct 157 GATAGAAATAGTTTTTCTAAAACAGATATTGAAGCAACTTTTATGCGTATGAAAGATGAT 216 Query 24007 CATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGC 24053 || ||| |||| || ||| | ||||| | |||||| | ||||| || Sbjct 217 CACATGCAAAACGGACAATTAAAGCCTGCTTACAATGTTCAAATTGC 263 >seq57556 Length=433 Score = 91.5 bits (100), Expect = 4e-14 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 5391 TATTCGCTGACTCGGTAGCTGGTAGTGATAATTCAATACTTGTTGGGGAACTAGCGAAAA 5450 |||| |||| | ||| | || | ||| ||||||| ||| | | ||| |||| | | Sbjct 339 TATTTACTGATGCAGTAACAGGAACTGAAGATTCAATTCTTATAAGAGAATTAGCAACTA 280 Query 5451 TACTTAAACAAAACGGTGTTGATATAGGACAAAACAGGTTGTTCAAATGGTTAAGAAATA 5510 || | || ||||| || |||||||||||| |||| || | ||||||||| | || | | Sbjct 279 TATTAAATCAAAAAGGAGTTGATATAGGAGAAAAGAGACTATTCAAATGGATGAGGGAAA 220 Query 5511 ATGGATATCTCATTAAAA-AGAGTGGAGAAAGTTATAACTTACCAACTCAAAAGAGTATG 5569 |||| ||| | || |||| ||| ||| | | | |||||||| |||||||| ||| Sbjct 219 ATGGGTATTTAATCAAAAGAGA-TGGTATAGATAAGAACTTACCTACTCAAAAATCCATG 161 Query 5570 GATCTAAAAATCTTGGA 5586 ||||| ||| | |||| Sbjct 160 GATCTTAAATTAATGGA 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145752851729072