Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq20608 233 2e-56 seq1625 107 2e-18 seq7358 102 8e-17 >seq20608 Length=25523 Score = 233 bits (258), Expect = 2e-56 Identities = 478/708 (68%), Gaps = 2/708 (0%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 |||||||| |||||||| || || || |||| | || ||| | |||||||| |||||| Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983 Query 16019 GGATTTTTTGAAC-AATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCAC 16077 ||||||| | | || | || | |||| | |||| || | ||| || ||||| Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCC-AGCTCCAGCATAAGTCTGTCTGCCAC 9042 Query 16078 AAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137 ||||| ||||||| ||||||||| ||| |||| || | | || || || | || Sbjct 9043 GAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGC 9102 Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACT 16197 ||||| | || | | |||||| |||| | | ||||| || ||| | ||| Sbjct 9103 CTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCGG 9162 Query 16198 ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 | || || || | | |||||||||||| || ||||| ||||| || || || Sbjct 9163 CTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACC 9222 Query 16258 TTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTT 16317 || || || || || | || || |||||||| ||||| |||| |||||| | || || Sbjct 9223 TTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTT 9282 Query 16318 AATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGC 16377 | ||| ||||| | ||||| |||||||||||||| || ||||| || | ||||| || Sbjct 9283 GAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGC 9342 Query 16378 AACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgc 16437 |||| || || || | || | ||| | | ||||| |||||||| ||| Sbjct 9343 TACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGC 9402 Query 16438 tttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCT 16497 || | || |||| ||| |||| || ||||| || | | | || |||||||| Sbjct 9403 CTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGA 9462 Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 || ||| ||||| || || || | |||| ||||||| ||| | || || ||||| || Sbjct 9463 GTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGC 9522 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTC 16617 || || || ||||| || || ||||| | || || ||||| | ||| | || Sbjct 9523 AATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTC 9582 Query 16618 TGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 | |||||||| || ||||| ||||| || | |||||| || || || Sbjct 9583 CACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAG 9630 >seq1625 Length=211188 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| ||||| ||||| ||||||||||| || Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 134559 Query 16379 ACCA 16382 |||| Sbjct 134560 ACCA 134563 >seq7358 Length=89575 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || |||||||| || | | || ||| |||| | Sbjct 22366 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCCGTTGTTTCTGCCATGACTGCAAAAC 22425 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||| | || ||||||||||||||||| |||||||| ||||| |||| Sbjct 22426 GCTGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 22485 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 22486 CCATAAAATCAAAAGGATTTTCTG 22509 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 24217 ATCCAAGTTCCACAAGTAATCTGTCAGCAACAAACTCAATATACTGTTTCATCAAAACAC 24276 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 24277 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 24319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461975647959200