Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 233 2e-56
seq1625 107 2e-18
seq7358 102 8e-17
>seq20608
Length=25523
Score = 233 bits (258), Expect = 2e-56
Identities = 478/708 (68%), Gaps = 2/708 (0%)
Strand=Plus/Plus
Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018
|||||||| |||||||| || || || |||| | || ||| | |||||||| ||||||
Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983
Query 16019 GGATTTTTTGAAC-AATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCAC 16077
||||||| | | || | || | |||| | |||| || | ||| || |||||
Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCC-AGCTCCAGCATAAGTCTGTCTGCCAC 9042
Query 16078 AAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137
||||| ||||||| ||||||||| ||| |||| || | | || || || | ||
Sbjct 9043 GAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGC 9102
Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACT 16197
||||| | || | | |||||| |||| | | ||||| || ||| | |||
Sbjct 9103 CTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCGG 9162
Query 16198 ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257
| || || || | | |||||||||||| || ||||| ||||| || || ||
Sbjct 9163 CTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACC 9222
Query 16258 TTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTT 16317
|| || || || || | || || |||||||| ||||| |||| |||||| | || ||
Sbjct 9223 TTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTT 9282
Query 16318 AATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGC 16377
| ||| ||||| | ||||| |||||||||||||| || ||||| || | ||||| ||
Sbjct 9283 GAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGC 9342
Query 16378 AACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgc 16437
|||| || || || | || | ||| | | ||||| |||||||| |||
Sbjct 9343 TACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGC 9402
Query 16438 tttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCT 16497
|| | || |||| ||| |||| || ||||| || | | | || ||||||||
Sbjct 9403 CTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGA 9462
Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557
|| ||| ||||| || || || | |||| ||||||| ||| | || || ||||| ||
Sbjct 9463 GTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGC 9522
Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTC 16617
|| || || ||||| || || ||||| | || || ||||| | ||| | ||
Sbjct 9523 AATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTC 9582
Query 16618 TGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665
| |||||||| || ||||| ||||| || | |||||| || || ||
Sbjct 9583 CACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAG 9630
>seq1625
Length=211188
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| ||||| ||||| ||||||||||| ||
Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || ||||| || |||||||| ||
Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 134559
Query 16379 ACCA 16382
||||
Sbjct 134560 ACCA 134563
>seq7358
Length=89575
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || |||||||| || | | || ||| |||| |
Sbjct 22366 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCCGTTGTTTCTGCCATGACTGCAAAAC 22425
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||| | || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 22426 GCTGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 22485
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||||||||||| ||
Sbjct 22486 CCATAAAATCAAAAGGATTTTCTG 22509
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 24217 ATCCAAGTTCCACAAGTAATCTGTCAGCAACAAACTCAATATACTGTTTCATCAAAACAC 24276
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
| |||||||| || | ||| || | ||||||||||||||
Sbjct 24277 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 24319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461975647959200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |