Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq12380 123 2e-23
>seq12380
Length=54645
Score = 123 bits (136), Expect = 2e-23
Identities = 568/885 (64%), Gaps = 27/885 (3%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| ||| || || || || || || || ||||| ||| | ||
Sbjct 12158 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 12099
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| ||||| |||| ||| | ||| | ||| |||||||| | || || |
Sbjct 12098 ATTGAAATGTTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 12039
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || || | ||| | || || | | |||| |||||
Sbjct 12038 CACGTGGACAAAAAATCAGAGGATTCCTTCTTGGCTGCAGTGATTGGCATTGCATCCTGT 11979
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| || ||||| || ||||| || ||| ||||| || || || ||| |
Sbjct 11978 TTCAGTAACGTCTTTGTGACCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGG 11919
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || |||||||| ||||||||| | ||| | || ||| | ||||| |||||||
Sbjct 11918 GTCCAGGCTGACCTCAACTGTATGCAGGACCT-CTATAGAA-TGAGTGCAGACTGGAAGT 11861
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|||| | ||| ||||| | || || || || || ||||| || || ||| |
Sbjct 11860 ACTTGATCAATCTTTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 11801
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102
|||||| || | ||| | |||| | | || ||||| | || || | |
Sbjct 11800 AGCTCAAGTCATTAATGGGCGAAAACAATCTAGAAACTGAGAAAATGCCATCCAAT---A 11744
Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT----GACAGACACACTGTACCCTACCAGC 108158
||||| | | |||||| | | ||| || ||| || | ||| ||| |||
Sbjct 11743 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTGGACGGAAAG-CTG-ACCAACACAGG 11686
Query 108159 AA--GATGAA--GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214
| || || | |||| || | ||| | || | || |||| | |||||||||
Sbjct 11685 GACTGACAAAATGCACCCCCCTCTTGAAACG---CCTCTCTTTTCAGGCAGTGCCTATTT 11629
Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274
||||| | || | | ||| |||| | | ||| ||| ||| | | |
Sbjct 11628 TGTGGTCACTAGGAAGTATGTAGGGTATGTGCTCAAGAACGAAAAAATCCAGAAGTTTAT 11569
Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334
|| |||| |||||||| || ||||| || || | ||||||||||| |||| | |
Sbjct 11568 GGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAAAG-GA 11510
Query 108335 TCCGTGGA-TGCCTGGCTCTGT-TCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392
||| || | | || ||||| | |||| | | | |||||| |||| || |||||| |
Sbjct 11509 TCCCTGAAGTCCCAGGCTCACTGTCCTTGAG-CTCTAAGTATGACATGTCTGACATGCAT 11451
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
|| || || ||| | ||||||||||||||| || || || | || ||| || ||
Sbjct 11450 GCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCCCCC 11391
Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512
|| | |||||| ||| |||| | | | | ||||||| || || || ||| ||
Sbjct 11390 TACCCCCCCTGCAGCGGAGTCCACGTGCGCTCTGTGTGCATTTTTGGAGCAGGTGACTTG 11331
Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
|||||||||| | | || ||| | || || || |||||||||
Sbjct 11330 AACTGGATTCTTCGTACACACCACTTGTTTGCCAATAAGTTTGAC 11286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347875026833928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |