Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq12380 123 2e-23 >seq12380 Length=54645 Score = 123 bits (136), Expect = 2e-23 Identities = 568/885 (64%), Gaps = 27/885 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | || Sbjct 12158 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 12099 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| ||||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 12098 ATTGAAATGTTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 12039 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | ||| | || || | | |||| ||||| Sbjct 12038 CACGTGGACAAAAAATCAGAGGATTCCTTCTTGGCTGCAGTGATTGGCATTGCATCCTGT 11979 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| || ||||| || ||| ||||| || || || ||| | Sbjct 11978 TTCAGTAACGTCTTTGTGACCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGG 11919 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||||||| | ||| | || ||| | ||||| ||||||| Sbjct 11918 GTCCAGGCTGACCTCAACTGTATGCAGGACCT-CTATAGAA-TGAGTGCAGACTGGAAGT 11861 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || || || || ||||| || || ||| | Sbjct 11860 ACTTGATCAATCTTTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 11801 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| || | ||| | |||| | | || ||||| | || || | | Sbjct 11800 AGCTCAAGTCATTAATGGGCGAAAACAATCTAGAAACTGAGAAAATGCCATCCAAT---A 11744 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT----GACAGACACACTGTACCCTACCAGC 108158 ||||| | | |||||| | | ||| || ||| || | ||| ||| ||| Sbjct 11743 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTGGACGGAAAG-CTG-ACCAACACAGG 11686 Query 108159 AA--GATGAA--GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 | || || | |||| || | ||| | || | || |||| | ||||||||| Sbjct 11685 GACTGACAAAATGCACCCCCCTCTTGAAACG---CCTCTCTTTTCAGGCAGTGCCTATTT 11629 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274 ||||| | || | | ||| |||| | | ||| ||| ||| | | | Sbjct 11628 TGTGGTCACTAGGAAGTATGTAGGGTATGTGCTCAAGAACGAAAAAATCCAGAAGTTTAT 11569 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 || |||| |||||||| || ||||| || || | ||||||||||| |||| | | Sbjct 11568 GGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAAAG-GA 11510 Query 108335 TCCGTGGA-TGCCTGGCTCTGT-TCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 ||| || | | || ||||| | |||| | | | |||||| |||| || |||||| | Sbjct 11509 TCCCTGAAGTCCCAGGCTCACTGTCCTTGAG-CTCTAAGTATGACATGTCTGACATGCAT 11451 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || || || ||| | ||||||||||||||| || || || | || ||| || || Sbjct 11450 GCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCCCCC 11391 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || | |||||| ||| |||| | | | | ||||||| || || || ||| || Sbjct 11390 TACCCCCCCTGCAGCGGAGTCCACGTGCGCTCTGTGTGCATTTTTGGAGCAGGTGACTTG 11331 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||||||||| | | || ||| | || || || ||||||||| Sbjct 11330 AACTGGATTCTTCGTACACACCACTTGTTTGCCAATAAGTTTGAC 11286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347875026833928