Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq20608 235 5e-57 seq1625 111 2e-19 >seq20608 Length=25523 Score = 235 bits (260), Expect = 5e-57 Identities = 605/901 (67%), Gaps = 24/901 (3%) Strand=Plus/Plus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||| || |||||||||||||| || ||||||| || ||| | |||||||| ||||| Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 |||||| | |||| || || | || | || || | | | ||| || || | | Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACG 9043 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 || |||||||| | ||||||| |||||||| || | || ||||| || | Sbjct 9044 AATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 9103 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCA 14167 | || | || || | |||||| |||| | | | || || || | | | || Sbjct 9104 TCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATT-TCTTTC-ACTCTCG 9161 Query 14168 --TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 14225 | |||| | || |||||||| || || ||||| ||||| || | | Sbjct 9162 GCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAAC 9221 Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 | | |||||| ||||||||||| || |||||||| | || |||| | |||| | || | Sbjct 9222 CTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCT 9281 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || || | |||||| | Sbjct 9282 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGG 9341 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCA 14404 ||| | ||||||||| | | || | ||||| || | ||||| |||||| || Sbjct 9342 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCT 9400 Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT 14463 | || || || | | | ||| | ||||| ||||| || | || |||||| ||||| Sbjct 9401 GCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTT-TCTTT 9459 Query 14464 --AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14521 ||| ||| |||||| || ||||| || | ||| |||||||||| ||||||||||| Sbjct 9460 GGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCC 9517 Query 14522 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAAT 14581 || || || || || ||||| ||||| ||||||| || || ||| | ||| Sbjct 9518 ATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAA 9577 Query 14582 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATGT 14639 | || |||| |||||||| ||||| |||||||| | |||||| || ||| || ||| Sbjct 9578 CACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGA 9637 Query 14640 TTTTAATAAAGTATTGCTCTTCATTGCT-GAGTTTTTTCCAATCGGCTAAA--TCCTTAG 14696 | ||||| ||| ||| ||| ||| || || ||| | ||| || ||||||| Sbjct 9638 GAT--ATAAAATATCTCTCCTCA-AGCTCTAGGGCTTCCCAGT--GCTGAATGTCCTTAG 9692 Query 14697 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATA 14756 | ||| | || || ||| ||| |||||| ||| | ||| |||||||| ||| | Sbjct 9693 AGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAA 9751 Query 14757 TTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTTCTTTAAGAATTGGTT 14816 | || | ||| ||| |||| | ||||| | | | | |||| | | || | ||||| Sbjct 9752 TATCATGGTATTCGATAAGAAAGATGACAAAAC-GGCAAAGGTTTTTCTTAGTAGTGGTT 9810 Query 14817 C 14817 | Sbjct 9811 C 9811 >seq1625 Length=211188 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 134558 CTACCACACGTTCTCC 134573 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 132995 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 133054 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||| Sbjct 133055 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 133114 Query 13976 ATAAAATCAAATGGATTT 13993 ||||| ||||| |||||| Sbjct 133115 ATAAAGTCAAACGGATTT 133132 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 14454 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| ||||| ||| ||| |||||| || ||||| || | |||||||||||||| || Sbjct 136411 CCTT-TCTTTGGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 136467 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||||| || || || || ||||| ||||| | ||||||| Sbjct 136468 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 136514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481786247924960