Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 235 5e-57
seq1625 111 2e-19
>seq20608
Length=25523
Score = 235 bits (260), Expect = 5e-57
Identities = 605/901 (67%), Gaps = 24/901 (3%)
Strand=Plus/Plus
Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987
||||| || |||||||||||||| || ||||||| || ||| | |||||||| |||||
Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983
Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047
|||||| | |||| || || | || | || || | | | ||| || || | |
Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACG 9043
Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107
|| |||||||| | ||||||| |||||||| || | || ||||| || |
Sbjct 9044 AATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 9103
Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCA 14167
| || | || || | |||||| |||| | | | || || || | | | ||
Sbjct 9104 TCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATT-TCTTTC-ACTCTCG 9161
Query 14168 --TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 14225
| |||| | || |||||||| || || ||||| ||||| || | |
Sbjct 9162 GCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAAC 9221
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
| | |||||| ||||||||||| || |||||||| | || |||| | |||| | || |
Sbjct 9222 CTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCT 9281
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| || || || || |||||||| ||||| || || | |||||| |
Sbjct 9282 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGG 9341
Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCA 14404
||| | ||||||||| | | || | ||||| || | ||||| |||||| ||
Sbjct 9342 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCT 9400
Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT 14463
| || || || | | | ||| | ||||| ||||| || | || |||||| |||||
Sbjct 9401 GCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTT-TCTTT 9459
Query 14464 --AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14521
||| ||| |||||| || ||||| || | ||| |||||||||| |||||||||||
Sbjct 9460 GGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCC 9517
Query 14522 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAAT 14581
|| || || || || ||||| ||||| ||||||| || || ||| | |||
Sbjct 9518 ATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAA 9577
Query 14582 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATGT 14639
| || |||| |||||||| ||||| |||||||| | |||||| || ||| || |||
Sbjct 9578 CACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGA 9637
Query 14640 TTTTAATAAAGTATTGCTCTTCATTGCT-GAGTTTTTTCCAATCGGCTAAA--TCCTTAG 14696
| ||||| ||| ||| ||| ||| || || ||| | ||| || |||||||
Sbjct 9638 GAT--ATAAAATATCTCTCCTCA-AGCTCTAGGGCTTCCCAGT--GCTGAATGTCCTTAG 9692
Query 14697 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATA 14756
| ||| | || || ||| ||| |||||| ||| | ||| |||||||| ||| |
Sbjct 9693 AGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAA 9751
Query 14757 TTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTTCTTTAAGAATTGGTT 14816
| || | ||| ||| |||| | ||||| | | | | |||| | | || | |||||
Sbjct 9752 TATCATGGTATTCGATAAGAAAGATGACAAAAC-GGCAAAGGTTTTTCTTAGTAGTGGTT 9810
Query 14817 C 14817
|
Sbjct 9811 C 9811
>seq1625
Length=211188
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| |
Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || || |||||||| ||||| || || || ||||| |
Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 134558 CTACCACACGTTCTCC 134573
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915
|| || ||| |||| || | |||| ||| || | | | || || || ||||| |
Sbjct 132995 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 133054
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| |||
Sbjct 133055 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 133114
Query 13976 ATAAAATCAAATGGATTT 13993
||||| ||||| ||||||
Sbjct 133115 ATAAAGTCAAACGGATTT 133132
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/107 (79%), Gaps = 5/107 (5%)
Strand=Plus/Plus
Query 14454 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511
|||| ||||| ||| ||| |||||| || ||||| || | |||||||||||||| ||
Sbjct 136411 CCTT-TCTTTGGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 136467
Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
|||||||||||| || || || || ||||| ||||| | |||||||
Sbjct 136468 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 136514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481786247924960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |