Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq20608 98.7 2e-15 seq1625 89.7 1e-12 >seq20608 Length=25523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||||||| | || ||||||||||||||| |||| | || ||||| || |||||| Sbjct 9345 GTAGCCTTTGCTACGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 9286 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| || | ||||||||||||| | |||||||| | ||| || || Sbjct 9285 CTCAAGAATCAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCAGAGAT 9226 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAA 102076 ||||| | || | |||||||| ||| | |||| ||| Sbjct 9225 AAAGGTTTACACTGTGACTTTGCCTGCCCGATGTTTAAA 9187 >seq1625 Length=211188 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| || || ||||||||||||||| |||| | || ||||| || |||||| Sbjct 134561 GTAGCCTTTGCCGCGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 134502 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||||| | || | ||||||||||||| | |||||||| Sbjct 134501 CTCAAGAAACGAGGACTCATGCCTGGTCTCACATTTTCCAATGA 134458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988407739637260