Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20608 315 9e-81 seq2665 125 9e-24 seq1625 105 8e-18 seq7358 102 1e-16 seq12486 91.5 2e-13 >seq20608 Length=25523 Score = 315 bits (348), Expect = 9e-81 Identities = 634/937 (68%), Gaps = 15/937 (2%) Strand=Plus/Plus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 33292 ||| |||||| |||| || | |||| ||| ||| | | |||| ||||| || | Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTTGACACCACTCCTATCCT 8910 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || | || || | || || || || ||||| || |||||| || ||| | || Sbjct 8911 CCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTC 8970 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| || ||||| ||||| || | ||| || |||| ||| || || | Sbjct 8971 CATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAG 9030 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 ||| ||||| |||||||| ||||| ||||| | |||||||| || |||| || Sbjct 9031 TCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTT 9090 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 ||||| | ||| | || || || || ||||| || || | ||| | || || Sbjct 9091 TACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTC 9150 Query 33533 TCTAACGGTTTCTTCACTC----GGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | | || ||| ||| ||| || | | |||||||||||| || || | Sbjct 9151 TTTCAC----TCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAA 9206 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | || ||||| | ||| | ||||| ||||| | ||| || ||||| ||||| || |||| Sbjct 9207 AGTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCA 9266 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 || || | || || ||||| ||||| || || || || || |||||||||||||||| Sbjct 9267 CGAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTT 9326 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 33765 | || | ||||||||| | | | |||||| | | | | |||| ||||| Sbjct 9327 CCACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAG 9386 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 ||||||||| |||||||| ||||||| ||||||| | || |||||||| |||||| Sbjct 9387 GCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAA 9446 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | || |||| || || |||| ||||| || || | |||||| ||||||| ||| Sbjct 9447 ATTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAAC 9506 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | |||||||| ||||| || || || || |||||||| || || |||||||| |||| Sbjct 9507 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTT 9566 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || | ||| | || | || |||||||| ||||| |||||||| | |||||| || | Sbjct 9567 CTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAG 9626 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 ||| ||||| |||||||||| | || || | ||| | ||| | | || | Sbjct 9627 CCAGAACATGAGATATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATGT 9686 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | ||||| | | |||| || || ||| |||||| || ||||| || |||||||| | Sbjct 9687 CCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCT 9745 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||| || ||||| |||| ||| | || || ||||| Sbjct 9746 GCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq2665 Length=168205 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| |||| ||||| ||||| || ||||| |||||||| ||||| | Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 80587 CTGTTTCTTATACCATA 80603 Score = 109 bits (120), Expect = 7e-19 Identities = 139/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 62291 | || | |||||||| | ||| ||||||| | |||| | || || |||| | ||||| Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAATTTCTTGTA 77821 Query 62292 T--TCTGAA 62298 | |||||| Sbjct 77822 TGCTCTGAA 77830 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||||||||| | || || || || | | Sbjct 89086 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 89145 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 89146 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 89205 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 89206 AGGCTCCAGGTAAATAGC 89223 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| | | | || || |||| ||| || || || || || || | Sbjct 84561 CATAGGTTTCATATGGGTCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 84620 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||| | |||||| | || || || || || ||||| |||| Sbjct 84621 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 84680 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | || | Sbjct 84681 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGGTGGC 84740 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 84741 GTTTATTTGA 84750 >seq1625 Length=211188 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || || ||||||| Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 33724 C 33724 | Sbjct 134558 C 134558 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 136424 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 136483 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || ||||||||||||||| Sbjct 136484 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 136528 >seq7358 Length=89575 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||| || Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| ||||| Sbjct 30172 ACCACTCTTTCTCC 30185 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| |||||||||||||| ||||| || || || | ||| |||||| Sbjct 39777 AAATTTTCATTCACAATTCCATCACTGGCGGCAAAGAAAGCTAAGATATGAGAAATAAAA 39836 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 ||||| || |||| | | || || ||||| | | || ||| || |||| Sbjct 39837 TATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 39885 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 43521 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGGG 43580 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 43581 TACTGGATTGGAAAGATGACAAATC 43605 >seq12486 Length=54161 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||||||| |||||||||||| |||||||||| ||||| || || ||| Sbjct 34010 GGATCTTTGGGTTTGATTTTAGCATTGACTTTAAACAGACATAAGCATCCGCTTAACCTG 34069 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||||||| Sbjct 34070 TACCTGCTTTTTGGATTT 34087 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | || | |||||||| || |||||||||| || ||| Sbjct 39988 GTTACTTTCTATGATGTCTATGTTATTCTGCAAGCTTTTATACTGACTACTGCTGTATTT 40047 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| | |||||||||||| |||| || ||||| ||| ||| | |||| Sbjct 40048 CTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGACTTCAGCAAATTTGGAGCAGG 40106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629087232020160