Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 246 3e-60
seq7358 123 2e-23
seq1625 120 3e-22
seq2665 105 6e-18
>seq20608
Length=25523
Score = 246 bits (272), Expect = 3e-60
Identities = 499/731 (68%), Gaps = 15/731 (2%)
Strand=Plus/Plus
Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422
|| || || |||||||| |||| || || ||| |||||||||| ||||||||| | |
Sbjct 8933 TCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTTTCT 8992
Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482
|| | || || || | || | | ||| | | ||| ||||| |||||||| |||
Sbjct 8993 ACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCAATA 9052
Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542
|||| ||||||| |||||||| || | || | || || | || |||| |
Sbjct 9053 TACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTGAGG 9112
Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TC--CTTAGAT 11599
||||||| |||||| |||| | || ||||| || | | ||| || || |
Sbjct 9113 AACTCCTGTTCTATCCTAACAGAATTGATGATGATTTC---TTTCACTCTCGGCTCCAAA 9169
Query 11600 GGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCT 11659
||| || | | ||||||||||| || ||||| ||||| |||||||||| |||
Sbjct 9170 GGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCT 9229
Query 11660 CTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAA 11719
|| || || |||||||| |||||||| | || |||| | |||| | || || | |||
Sbjct 9230 CTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAG 9289
Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779
||||| | ||||| |||||||||||||| ||||| ||||| | ||||| ||||| ||
Sbjct 9290 AATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACA 9349
Query 11780 CTTTCTCCATA--TA-CCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTT 11835
| ||||||| | || ||| ||| || | ||||| |||||||| || |||||
Sbjct 9350 CGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCTGCCTTCTT 9408
Query 11836 TTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCT 11893
||||| | ||| | || || || || || | | |||| ||||| | ||
Sbjct 9409 CTTTACACGAGGCATCATCTCAATGGCATTGAAGAGA--AATTTCCTTTCTTTGGAGTCC 9466
Query 11894 CTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATT 11953
| | || || || || | | |||| ||||||| ||| | || |||||||| || |||
Sbjct 9467 TTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATT 9526
Query 11954 TGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCT 12013
|| || ||||||||||| | || |||| | ||| || || ||| | ||| |
Sbjct 9527 TGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACC 9586
Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073
|| || |||||||| || |||||||| | |||||| || || || | ||| ||||||
Sbjct 9587 AAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAA 9646
Query 12074 TATTTTTCGTC 12084
||| | || ||
Sbjct 9647 TATCTCTCCTC 9657
>seq7358
Length=89575
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 30050 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 30109
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 30110 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 30169
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||||||
Sbjct 30170 CCACCACTCTTTCTCC 30185
>seq1625
Length=211188
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||| | ||||||||| ||
Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 134559
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 134560 ACCACACGTTCTCC 134573
>seq2665
Length=168205
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || | ||||| | ||||| |||||||| ||||| |||||||||
Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 80587 CTGTTTCTTATACCAT 80602
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| || || || |||||||| || ||||| | || |||| | | | |||| ||
Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || || |||||||| || || |||||||| ||||||||||| | | || | ||
Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| ||||| || ||||| || || ||||| | ||| ||
Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTT 77798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467981475215680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |