Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq20608 246 3e-60 seq7358 123 2e-23 seq1625 120 3e-22 seq2665 105 6e-18 >seq20608 Length=25523 Score = 246 bits (272), Expect = 3e-60 Identities = 499/731 (68%), Gaps = 15/731 (2%) Strand=Plus/Plus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || || |||||||| |||| || || ||| |||||||||| ||||||||| | | Sbjct 8933 TCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTTTCT 8992 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || | || || || | || | | ||| | | ||| ||||| |||||||| ||| Sbjct 8993 ACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCAATA 9052 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 |||| ||||||| |||||||| || | || | || || | || |||| | Sbjct 9053 TACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTGAGG 9112 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TC--CTTAGAT 11599 ||||||| |||||| |||| | || ||||| || | | ||| || || | Sbjct 9113 AACTCCTGTTCTATCCTAACAGAATTGATGATGATTTC---TTTCACTCTCGGCTCCAAA 9169 Query 11600 GGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCT 11659 ||| || | | ||||||||||| || ||||| ||||| |||||||||| ||| Sbjct 9170 GGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCT 9229 Query 11660 CTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAA 11719 || || || |||||||| |||||||| | || |||| | |||| | || || | ||| Sbjct 9230 CTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAG 9289 Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779 ||||| | ||||| |||||||||||||| ||||| ||||| | ||||| ||||| || Sbjct 9290 AATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACA 9349 Query 11780 CTTTCTCCATA--TA-CCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTT 11835 | ||||||| | || ||| ||| || | ||||| |||||||| || ||||| Sbjct 9350 CGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCTGCCTTCTT 9408 Query 11836 TTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCT 11893 ||||| | ||| | || || || || || | | |||| ||||| | || Sbjct 9409 CTTTACACGAGGCATCATCTCAATGGCATTGAAGAGA--AATTTCCTTTCTTTGGAGTCC 9466 Query 11894 CTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATT 11953 | | || || || || | | |||| ||||||| ||| | || |||||||| || ||| Sbjct 9467 TTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATT 9526 Query 11954 TGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCT 12013 || || ||||||||||| | || |||| | ||| || || ||| | ||| | Sbjct 9527 TGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACC 9586 Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 || || |||||||| || |||||||| | |||||| || || || | ||| |||||| Sbjct 9587 AAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAA 9646 Query 12074 TATTTTTCGTC 12084 ||| | || || Sbjct 9647 TATCTCTCCTC 9657 >seq7358 Length=89575 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 30050 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 30109 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 30110 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 30169 Query 11772 CTACTACTCTTTCTCC 11787 | || ||||||||||| Sbjct 30170 CCACCACTCTTTCTCC 30185 >seq1625 Length=211188 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||| | ||||||||| || Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 134559 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 134560 ACCACACGTTCTCC 134573 >seq2665 Length=168205 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || | ||||| | ||||| |||||||| ||||| ||||||||| Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 80587 CTGTTTCTTATACCAT 80602 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || |||||||| || ||||| | || |||| | | | |||| || Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | || | || Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || || ||||| | ||| || Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTT 77798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467981475215680