Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq80512 199 9e-47 seq90859 114 3e-21 seq71546 111 4e-20 seq58932 109 1e-19 >seq80512 Length=230 Score = 199 bits (220), Expect = 9e-47 Identities = 179/225 (80%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 2784 GGTGAAACGTAATCGTCGCGGTGAAGTCATATCCCTGGATTGCTGTATGCCGTGGGAAAC 2843 ||||| ||||| |||||||||| || | ||||| |||||||||||||||||| Sbjct 6 GGTGATCCGTAACAGTCGCGGTGAGGTGACCAGTCTGGAAGCCTGTATGCCGTGGGAAAC 65 Query 2844 GACGCTGATGAATACTGGTGGCCGATATACCTACGGTTTGTACAACGAATATGGGGCGTT 2903 | ||| | || || |||||||| || ||||||||| | || |||||| | ||| || Sbjct 66 CGCACTGCTTAACACAGGTGGCCGGTACACCTACGGTGTTTATAACGAACAGGGGAATTT 125 Query 2904 TGCGATCAGTCCGGACGATATGATCCACATCCGTGCGCTGGGTAATAATCAGAAGATGGG 2963 ||| |||||||||| || |||||||||||||| |||||||||||||| ||| |||||| Sbjct 126 TGCTGTCAGTCCGGATGACATGATCCACATCCGGGCGCTGGGTAATAACCAGCGGATGGG 185 Query 2964 GCTGAGTCCGATTATGCAACATGCCGAAACAATAGGCATGGGGAT 3008 ||| |||||||| |||| ||||| ||||| || ||||||||||| Sbjct 186 GCTCAGTCCGATAGTGCAGCATGCGGAAACCATCGGCATGGGGAT 230 >seq90859 Length=207 Score = 114 bits (126), Expect = 3e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 4866 AAAATGACATCGAAAATCATTCGTGTGTCTAATGAGTTGCTGCAGGACAGCGCGATCGAT 4925 ||| || | || ||||| || ||||| || |||||||||||||||||||||| |||| || Sbjct 1 AAATTGTCTTCCAAAATTATCCGTGTATCAAATGAGTTGCTGCAGGACAGCGGGATCAAT 60 Query 4926 ATGGAAGCTTATCTTGCCCGTCGCATTGCTGAACGTATTGGTCGTGGTGAAGCCCGTTAT 4985 || ||| | || |||||| || || || | ||||| || |||||||| || || Sbjct 61 ATTGAATCCTACCTTGCCGCCCGTATCGCGCAGCGTATCGGCCGTGGTGAGGCTAAATAC 120 Query 4986 CTGATTCAGGGGACGGGTGCTGGTACGCCTAAACAACCCAAAGGGCTGGCAGCATCAGTG 5045 ||| | | || || ||||| |||||||| ||| || ||||| |||| | || ||| Sbjct 121 CTGGTGAAAGGTACCGGTGCCGGTACGCCGGTACAGCCGAAAGGCCTGGATGTTTCCGTG 180 Query 5046 ACCGGCAC 5053 || || || Sbjct 181 ACAGGAAC 188 >seq71546 Length=268 Score = 111 bits (122), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 3713 GACGATAACCCGGCGCACATTATCGGTTATGGATCGGTGTTTGACTGTCGTTCTGAGCTG 3772 || ||||| ||||| |||||||||||| | ||||||||| ||| | || |||| | Sbjct 261 GAGGATAAACCGGCCCACATTATCGGTCTGGCTTCGGTGTTTAACTCCCTGTCCGAGCCG 202 Query 3773 ATATTCGGTTCATTCCGCGAAATCATCCGGCCCGGCGCTTTTGACGATGTGCTTGGTGAT 3832 || | || |||||||||||| ||| |||||||| |||||||||||||| |||| Sbjct 201 ATGTGGGG---ATTCCGCGAAATTATCAAACCCGGCGCATTTGACGATGTGCTGAATGAT 145 Query 3833 GATGTACGCGCACTGTTTAACCACGATCCTAATTTTATTCTTGGGCG 3879 ||||| || || ||||| || || || | |||| ||| || || || Sbjct 144 GATGTGCGGGCGCTGTTCAATCATGACCGCAATTATATCCTCGGCCG 98 >seq58932 Length=406 Score = 109 bits (120), Expect = 1e-19 Identities = 223/331 (67%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 23372 TGAAAGTACCAATAAAGGTTTCTACTTTGCTGTCCTTGAATTTCTCAACAAGCAGATCAC 23431 |||| |||| ||| |||| | | || | || | |||||| ||| | |||||||||| Sbjct 43 TGAATTTACCGATATAGGTCTGGATTTCAGTTTCTTCGAATTTATCAGCCAGCAGATCAC 102 Query 23432 GAAATTCGTTAGCCATTTCTTCCTGCACCGCCTCCAGCTGAATAATGCGCAGAACCAGTA 23491 | ||||| | || |||| |||| || ||| |||||| ||| ||||| ||||| | Sbjct 103 GGAATTCCTGGGCGATTTGCTCCTCCAGTTTTTCCTGCTGAACAATACGCAGTACCAGCA 162 Query 23492 CCGGACGATCGCCA---GTGATAATGCTGAGGCGTAATTTAAACGGACGTTCTTTCAGAC 23548 | || ||| ||| || | || |||| || | ||| | | |||||| ||| Sbjct 163 CAGGTACATCACCACCGGTCAGAACGCTGTAACGCAGTTTGATAGCACGTTCAGACAGTT 222 Query 23549 CTTCAAACGGAATGCATTTAAATTCAAATGCCACTGGCATAATGTCTTTGGTCTTCGCTT 23608 | || | || |||| |||| | ||| | | ||||| | ||| | | ||||||| Sbjct 223 CATCGTATGGTGTGCAGGTAAACTGGAATACTGCAGGCATGACGTCACGGCTTTTCGCTT 282 Query 23609 CGACAGACTCCATCAGGGAGCGTTTGCCGCTGAAGTCATTATCTTCAAAATCAGCGGTCT 23668 | || ||||||| ||||| || ||| ||| ||| | |||||| ||| |||| Sbjct 283 CCACGCTTTCCATCACAGAGCGCTTAGCGCCGAAATCACTGTCTTCATGATCTGCGGAGC 342 Query 23669 GGTTTGCTTCAATCGTGATTTTACGGACCGC 23699 || ||||||| || |||||||| || || || Sbjct 343 GGCTTGCTTCGATGGTGATTTTGCGTACAGC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118384635655904