Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq80512 199 9e-47
seq90859 114 3e-21
seq71546 111 4e-20
seq58932 109 1e-19
>seq80512
Length=230
Score = 199 bits (220), Expect = 9e-47
Identities = 179/225 (80%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 2784 GGTGAAACGTAATCGTCGCGGTGAAGTCATATCCCTGGATTGCTGTATGCCGTGGGAAAC 2843
||||| ||||| |||||||||| || | ||||| ||||||||||||||||||
Sbjct 6 GGTGATCCGTAACAGTCGCGGTGAGGTGACCAGTCTGGAAGCCTGTATGCCGTGGGAAAC 65
Query 2844 GACGCTGATGAATACTGGTGGCCGATATACCTACGGTTTGTACAACGAATATGGGGCGTT 2903
| ||| | || || |||||||| || ||||||||| | || |||||| | ||| ||
Sbjct 66 CGCACTGCTTAACACAGGTGGCCGGTACACCTACGGTGTTTATAACGAACAGGGGAATTT 125
Query 2904 TGCGATCAGTCCGGACGATATGATCCACATCCGTGCGCTGGGTAATAATCAGAAGATGGG 2963
||| |||||||||| || |||||||||||||| |||||||||||||| ||| ||||||
Sbjct 126 TGCTGTCAGTCCGGATGACATGATCCACATCCGGGCGCTGGGTAATAACCAGCGGATGGG 185
Query 2964 GCTGAGTCCGATTATGCAACATGCCGAAACAATAGGCATGGGGAT 3008
||| |||||||| |||| ||||| ||||| || |||||||||||
Sbjct 186 GCTCAGTCCGATAGTGCAGCATGCGGAAACCATCGGCATGGGGAT 230
>seq90859
Length=207
Score = 114 bits (126), Expect = 3e-21
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 4866 AAAATGACATCGAAAATCATTCGTGTGTCTAATGAGTTGCTGCAGGACAGCGCGATCGAT 4925
||| || | || ||||| || ||||| || |||||||||||||||||||||| |||| ||
Sbjct 1 AAATTGTCTTCCAAAATTATCCGTGTATCAAATGAGTTGCTGCAGGACAGCGGGATCAAT 60
Query 4926 ATGGAAGCTTATCTTGCCCGTCGCATTGCTGAACGTATTGGTCGTGGTGAAGCCCGTTAT 4985
|| ||| | || |||||| || || || | ||||| || |||||||| || ||
Sbjct 61 ATTGAATCCTACCTTGCCGCCCGTATCGCGCAGCGTATCGGCCGTGGTGAGGCTAAATAC 120
Query 4986 CTGATTCAGGGGACGGGTGCTGGTACGCCTAAACAACCCAAAGGGCTGGCAGCATCAGTG 5045
||| | | || || ||||| |||||||| ||| || ||||| |||| | || |||
Sbjct 121 CTGGTGAAAGGTACCGGTGCCGGTACGCCGGTACAGCCGAAAGGCCTGGATGTTTCCGTG 180
Query 5046 ACCGGCAC 5053
|| || ||
Sbjct 181 ACAGGAAC 188
>seq71546
Length=268
Score = 111 bits (122), Expect = 4e-20
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 3713 GACGATAACCCGGCGCACATTATCGGTTATGGATCGGTGTTTGACTGTCGTTCTGAGCTG 3772
|| ||||| ||||| |||||||||||| | ||||||||| ||| | || |||| |
Sbjct 261 GAGGATAAACCGGCCCACATTATCGGTCTGGCTTCGGTGTTTAACTCCCTGTCCGAGCCG 202
Query 3773 ATATTCGGTTCATTCCGCGAAATCATCCGGCCCGGCGCTTTTGACGATGTGCTTGGTGAT 3832
|| | || |||||||||||| ||| |||||||| |||||||||||||| ||||
Sbjct 201 ATGTGGGG---ATTCCGCGAAATTATCAAACCCGGCGCATTTGACGATGTGCTGAATGAT 145
Query 3833 GATGTACGCGCACTGTTTAACCACGATCCTAATTTTATTCTTGGGCG 3879
||||| || || ||||| || || || | |||| ||| || || ||
Sbjct 144 GATGTGCGGGCGCTGTTCAATCATGACCGCAATTATATCCTCGGCCG 98
>seq58932
Length=406
Score = 109 bits (120), Expect = 1e-19
Identities = 223/331 (67%), Gaps = 3/331 (1%)
Strand=Plus/Plus
Query 23372 TGAAAGTACCAATAAAGGTTTCTACTTTGCTGTCCTTGAATTTCTCAACAAGCAGATCAC 23431
|||| |||| ||| |||| | | || | || | |||||| ||| | ||||||||||
Sbjct 43 TGAATTTACCGATATAGGTCTGGATTTCAGTTTCTTCGAATTTATCAGCCAGCAGATCAC 102
Query 23432 GAAATTCGTTAGCCATTTCTTCCTGCACCGCCTCCAGCTGAATAATGCGCAGAACCAGTA 23491
| ||||| | || |||| |||| || ||| |||||| ||| ||||| ||||| |
Sbjct 103 GGAATTCCTGGGCGATTTGCTCCTCCAGTTTTTCCTGCTGAACAATACGCAGTACCAGCA 162
Query 23492 CCGGACGATCGCCA---GTGATAATGCTGAGGCGTAATTTAAACGGACGTTCTTTCAGAC 23548
| || ||| ||| || | || |||| || | ||| | | |||||| |||
Sbjct 163 CAGGTACATCACCACCGGTCAGAACGCTGTAACGCAGTTTGATAGCACGTTCAGACAGTT 222
Query 23549 CTTCAAACGGAATGCATTTAAATTCAAATGCCACTGGCATAATGTCTTTGGTCTTCGCTT 23608
| || | || |||| |||| | ||| | | ||||| | ||| | | |||||||
Sbjct 223 CATCGTATGGTGTGCAGGTAAACTGGAATACTGCAGGCATGACGTCACGGCTTTTCGCTT 282
Query 23609 CGACAGACTCCATCAGGGAGCGTTTGCCGCTGAAGTCATTATCTTCAAAATCAGCGGTCT 23668
| || ||||||| ||||| || ||| ||| ||| | |||||| ||| ||||
Sbjct 283 CCACGCTTTCCATCACAGAGCGCTTAGCGCCGAAATCACTGTCTTCATGATCTGCGGAGC 342
Query 23669 GGTTTGCTTCAATCGTGATTTTACGGACCGC 23699
|| ||||||| || |||||||| || || ||
Sbjct 343 GGCTTGCTTCGATGGTGATTTTGCGTACAGC 373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118384635655904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |