Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq20608 102 6e-17 >seq20608 Length=25523 Score = 102 bits (112), Expect = 6e-17 Identities = 311/469 (66%), Gaps = 24/469 (5%) Strand=Plus/Minus Query 22447 TTCATGTCTCACATACTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTT 22506 || || ||||| | ||||| |||||||||| |||||||| ||| || ||| | Sbjct 9645 TTTATATCTCATGTTCTGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTTG 9586 Query 22507 GTGT-GCAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTT 22565 ||| | ||| || || ||| || | ||| |||||||| ||||||||| || Sbjct 9585 GTGGAGTGTTTTAGCCAA-GAAGTTCAG---ATTACAGAAGCCCTCTGTTTCTATGGCTT 9530 Query 22566 TCAGGTGGCAATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCAC----AT 22621 || | || |||||||| |||| | ||||||||| || || || ||| ||| || Sbjct 9529 CCAAATTGCCATGGAAAACATACGTTCTGAAATGTTTAGTCTCCTCATTGACACTTACAT 9470 Query 22622 TAGTAGCTAAAGAGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGAT-ATGCCATGTG 22678 || || | |||| || || | |||| || ||| ||| ||||| ||| Sbjct 9469 TAAGGACTCCAAAGAA---AGGAAATTTCTCTTCAATGCCATTGA-GATGATGCCTCGTG 9414 Query 22679 TTAAAGCCAAGGCACAGTGGGCTGCACAATGGCTGAATGCCACACATA-AGTCTATC--- 22734 | || |||||| | |||||| | ||| | || | ||| | || ||| | Sbjct 9413 TAAAGAAGAAGGCAGATTGGGCTTTGCCTTGGAT---TGG-AGACAAAGAGGCTACCTGT 9358 Query 22735 GCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCG 22794 | | |||| | | |||||||| | || ||||| || | |||||||| || ||||| Sbjct 9357 GGAGAACGTGTGGTAGCCTTTGCTACGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 9298 Query 22795 GCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTG 22854 | ||||||||||| ||||| | ||| |||| || | | |||||||| || | Sbjct 9297 TCAATATTCTGGCTCAAGAATCAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTT 9238 Query 22855 ATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTA 22903 |||||| | || ||||| |||||||||||||||| || | |||||| Sbjct 9237 ATTAGCAGAGATAAAGGTTTACACTGTGACTTTGCCTGCCCGATGTTTA 9189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355830821363116