Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7134 123 2e-23 seq4400 105 7e-18 >seq7134 Length=91468 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 86530 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 86471 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| |||||||| || ||| |||||| | ||||| || || || Sbjct 86470 CAGAGTGCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 86411 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||| || || | | || | ||||| |||||||||| Sbjct 86410 GATGCCCTCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 86351 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| |||||||||||||||||||| || ||||| Sbjct 86350 CTCCAGGGTGATGGTCTTACCGGTCAACGTTTTTACGAAGATCTGCAT 86303 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 87214 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 87155 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| |||||||| || ||| |||||| | ||||| || || || Sbjct 87154 CAGAGTGCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 87095 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| |||||||||| Sbjct 87094 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 87035 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 87034 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 86758 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 86699 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 86698 CAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 86639 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| |||||||||| Sbjct 86638 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 86579 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 86578 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 86986 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 86927 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 86926 CAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 86867 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| |||||||||| Sbjct 86866 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 86807 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 86806 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || |||||||| || ||||| || || || |||| || | ||||| Sbjct 87423 ACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCA-TCTTC 87365 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || || ||| ||||||| | ||||| || || || ||||| || || || Sbjct 87364 CAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCATG 87305 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| ||||||||||||| | ||| | ||||| Sbjct 87304 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 87245 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || || ||||| || ||||| Sbjct 87244 ACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 >seq4400 Length=129001 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| |||||| | |||| || || ||||| || ||| Sbjct 40321 GTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 40262 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| |||||||| ||||||||||| || ||| || || Sbjct 40261 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 40202 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || ||| ||||||||||||| | ||| | ||||||||||| | || Sbjct 40201 ACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 40142 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 40141 TTCACGAAGATCTGCATA 40124 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| |||||| | |||| || || ||||| || ||| Sbjct 40093 GTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 40034 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| |||||||| ||||||||||| || ||| || || Sbjct 40033 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 39974 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || ||| ||||||||||||| | ||| | ||||||||||| | || Sbjct 39973 ACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 39914 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 39913 TTCACGAAGATCTGCAT 39897 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| |||||| | |||| Sbjct 40568 ACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCC 40509 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||| || |||||| |||| || | ||||| || ||||| ||||||||||| Sbjct 40508 ATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTT 40449 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | || ||| ||||||||||||| | ||| | Sbjct 40448 ATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGAT 40389 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| | || || ||||| || |||||| Sbjct 40388 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 40352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495488739382400