Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20608 306 5e-78 seq1625 129 8e-25 seq2665 122 1e-22 seq7358 107 3e-18 >seq20608 Length=25523 Score = 306 bits (338), Expect = 5e-78 Identities = 584/858 (68%), Gaps = 12/858 (1%) Strand=Plus/Plus Query 49690 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749 || || || || ||||| || |||||| || ||| | ||||| || ||||| ||||| Sbjct 8930 TTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTT 8989 Query 49750 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCT 49809 || || ||| || |||| ||| || || | ||| || || || ||||| Sbjct 8990 TCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCA 9049 Query 49810 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA 49869 ||||| ||||| | |||||||| || | || || ||||| | ||| | || Sbjct 9050 ATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTG 9109 Query 49870 AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTC 49929 || || || ||||| || || | || | || || | | || ||| ||| Sbjct 9110 AGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCAC----TCTCGGCTC 9165 Query 49930 ----GGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTC 49985 ||| |||| | |||||||||||| || || || || ||||| | ||| | Sbjct 9166 CAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTT 9225 Query 49986 GTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 50045 ||||| ||||| ||||| |||||||| ||||| || |||| || || | || || || Sbjct 9226 ATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAG 9285 Query 50046 CCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| ||||| || ||||| || |||||||||||||||||||| || | |||||||| || Sbjct 9286 CCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTAC 9345 Query 50106 AAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTT 50162 | | |||||| | | | | |||| ||||| ||||||||| ||||| Sbjct 9346 CACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTT 9405 Query 50163 CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATC 50222 ||| ||||||| ||||||| | || |||||||| |||||| | || |||| || || Sbjct 9406 CTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGAGTC 9465 Query 50223 TTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 50282 |||| ||||| || || | |||||| ||||||| ||| | |||||||| ||||| || Sbjct 9466 CTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAAT 9525 Query 50283 CTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 || || || |||||||| || || |||||||| |||||| | ||| | || | Sbjct 9526 TTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCAC 9585 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 || |||||||| ||||| || ||||| | |||||| || |||| ||||| |||||| Sbjct 9586 CAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAA 9645 Query 50403 ATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 50462 || | | || | | ||| | ||| | | || || ||||| | | | || || Sbjct 9646 ATATCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATGTCCTTAGAGAGA-CCACCTC 9704 Query 50463 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTG 50522 || ||| |||||| || ||||| || |||||||| | ||| || ||||| |||| Sbjct 9705 CTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCATGGTATTC 9764 Query 50523 GATTGGGAAAATAACAAA 50540 ||| | || || ||||| Sbjct 9765 GATAAGAAAGATGACAAA 9782 >seq1625 Length=211188 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| || |||||||||| Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 50102 CAAC 50105 | || Sbjct 134558 CTAC 134561 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || |||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 136424 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 136483 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || ||||||||||||||| Sbjct 136484 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 136528 >seq2665 Length=168205 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| | Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 80587 CTGTTTCTTATACCATA 80603 Score = 114 bits (126), Expect = 2e-20 Identities = 140/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 78963 | || | |||||||| | ||| ||||||| | |||| | || || |||| | ||||| Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAATTTCTTGTA 77821 Query 78964 T--TCTGAA 78970 | |||||| Sbjct 77822 TGCTCTGAA 77830 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || || || || | | || Sbjct 89090 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 89149 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 89150 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 89209 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 89210 TCCAGGTAAATAGC 89223 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 || |||||||| || | |||||| ||| | |||||| || || || || ||||| Sbjct 84563 TAGGTTTCATATGGGTCATGTTCCTT---GGCCAGTTCACAGCTGGCTTCCAAGGCTCCA 84619 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 |||||||||||||| || || | |||||| | || || ||| | || ||||| ||| Sbjct 84620 TAATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGA 84679 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 || | | |||||||| || ||||| | ||||| || ||||| || || || | || Sbjct 84680 TACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGGTGG 84739 Query 79477 CTCTTATTAGA 79487 | ||||| || Sbjct 84740 CGTTTATTTGA 84750 >seq7358 Length=89575 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| ||||| Sbjct 30172 ACCACTCTTTCTCC 30185 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 43520 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGG 43579 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 43580 GTACTGGATTGGAAAGATGACAAATC 43605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717435859586080