Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 306 5e-78
seq1625 129 8e-25
seq2665 122 1e-22
seq7358 107 3e-18
>seq20608
Length=25523
Score = 306 bits (338), Expect = 5e-78
Identities = 584/858 (68%), Gaps = 12/858 (1%)
Strand=Plus/Plus
Query 49690 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749
|| || || || ||||| || |||||| || ||| | ||||| || ||||| |||||
Sbjct 8930 TTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTT 8989
Query 49750 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCT 49809
|| || ||| || |||| ||| || || | ||| || || || |||||
Sbjct 8990 TCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCA 9049
Query 49810 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA 49869
||||| ||||| | |||||||| || | || || ||||| | ||| | ||
Sbjct 9050 ATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTG 9109
Query 49870 AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTC 49929
|| || || ||||| || || | || | || || | | || ||| |||
Sbjct 9110 AGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCAC----TCTCGGCTC 9165
Query 49930 ----GGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTC 49985
||| |||| | |||||||||||| || || || || ||||| | ||| |
Sbjct 9166 CAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTT 9225
Query 49986 GTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 50045
||||| ||||| ||||| |||||||| ||||| || |||| || || | || || ||
Sbjct 9226 ATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAG 9285
Query 50046 CCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105
||| ||||| || ||||| || |||||||||||||||||||| || | |||||||| ||
Sbjct 9286 CCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTAC 9345
Query 50106 AAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTT 50162
| | |||||| | | | | |||| ||||| ||||||||| |||||
Sbjct 9346 CACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTT 9405
Query 50163 CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATC 50222
||| ||||||| ||||||| | || |||||||| |||||| | || |||| || ||
Sbjct 9406 CTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGAGTC 9465
Query 50223 TTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 50282
|||| ||||| || || | |||||| ||||||| ||| | |||||||| ||||| ||
Sbjct 9466 CTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAAT 9525
Query 50283 CTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342
|| || || |||||||| || || |||||||| |||||| | ||| | || |
Sbjct 9526 TTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCAC 9585
Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402
|| |||||||| ||||| || ||||| | |||||| || |||| ||||| ||||||
Sbjct 9586 CAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAA 9645
Query 50403 ATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 50462
|| | | || | | ||| | ||| | | || || ||||| | | | || ||
Sbjct 9646 ATATCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATGTCCTTAGAGAGA-CCACCTC 9704
Query 50463 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTG 50522
|| ||| |||||| || ||||| || |||||||| | ||| || ||||| ||||
Sbjct 9705 CTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCATGGTATTC 9764
Query 50523 GATTGGGAAAATAACAAA 50540
||| | || || |||||
Sbjct 9765 GATAAGAAAGATGACAAA 9782
>seq1625
Length=211188
Score = 129 bits (142), Expect = 8e-25
Identities = 103/124 (83%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || |
Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| || ||||||||||
Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557
Query 50102 CAAC 50105
| ||
Sbjct 134558 CTAC 134561
Score = 95.1 bits (104), Expect = 2e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280
|| |||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 136424 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 136483
Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | || || |||||||||||||||
Sbjct 136484 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 136528
>seq2665
Length=168205
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| |
Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| ||||||||||||| ||| ||||||||||| || || ||||| || || | | ||||
Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 80587 CTGTTTCTTATACCATA 80603
Score = 114 bits (126), Expect = 2e-20
Identities = 140/189 (74%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| || ||||| ||||||||||| |||||| ||| | || || || |||||||| |
Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| ||| || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 78963
| || | |||||||| | ||| ||||||| | |||| | || || |||| | |||||
Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAATTTCTTGTA 77821
Query 78964 T--TCTGAA 78970
| ||||||
Sbjct 77822 TGCTCTGAA 77830
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| |||||||||||||| | || || || || | | ||
Sbjct 89090 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 89149
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 89150 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 89209
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 89210 TCCAGGTAAATAGC 89223
Score = 89.7 bits (98), Expect = 7e-13
Identities = 135/191 (71%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356
|| |||||||| || | |||||| ||| | |||||| || || || || |||||
Sbjct 84563 TAGGTTTCATATGGGTCATGTTCCTT---GGCCAGTTCACAGCTGGCTTCCAAGGCTCCA 84619
Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416
|||||||||||||| || || | |||||| | || || ||| | || ||||| |||
Sbjct 84620 TAATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGA 84679
Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476
|| | | |||||||| || ||||| | ||||| || ||||| || || || | ||
Sbjct 84680 TACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGGTGG 84739
Query 79477 CTCTTATTAGA 79487
| ||||| ||
Sbjct 84740 CGTTTATTTGA 84750
>seq7358
Length=89575
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| |||||||| ||||| || || | || ||
Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171
Query 50104 ACAAGTCTCTCTCC 50117
|| | ||| |||||
Sbjct 30172 ACCACTCTTTCTCC 30185
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || |
Sbjct 43520 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGG 43579
Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542
|| |||||||| || || |||||||
Sbjct 43580 GTACTGGATTGGAAAGATGACAAATC 43605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717435859586080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |