Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 233 2e-56
seq1625 114 1e-20
>seq20608
Length=25523
Score = 233 bits (258), Expect = 2e-56
Identities = 600/899 (67%), Gaps = 20/899 (2%)
Strand=Plus/Plus
Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655
||||| || |||||||||||||| || ||||||| || ||| | |||||||| |||||
Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983
Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715
|||||| | |||| || || | || | || || | | | ||| || || |
Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACG 9043
Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775
|| |||||||| | ||||||| |||||||| || | || ||||| || |
Sbjct 9044 AATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 9103
Query 13776 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCA 13835
| || | || || | |||||| |||| | | || || || | | ||||
Sbjct 9104 TCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGAT--TTCTTTCACTCTCG 9161
Query 13836 --TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893
| |||| | || |||||||| || || ||||| ||||| || | |
Sbjct 9162 GCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAAC 9221
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
| | |||||| ||||||||||| || |||||||| | || |||| | |||| | || |
Sbjct 9222 CTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCT 9281
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||||| ||||| || || |||||||| ||||| || || | |||||| |
Sbjct 9282 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGG 9341
Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCA 14072
||| | ||||||||| | | || | ||||| || | ||||| |||||| ||
Sbjct 9342 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCT 9400
Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT- 14131
| || || || | | | ||| | ||||| ||||| || | | ||| | | |||||
Sbjct 9401 GCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTG 9460
Query 14132 -AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190
||| ||| |||||| || ||||| || | ||| |||||||||| ||||||||||||
Sbjct 9461 GAGTCCTT--AATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCA 9518
Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250
| || || || || ||||| || || ||||| | || ||||| | ||| |
Sbjct 9519 TGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAAC 9578
Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATGTT 14308
|| |||| |||||||| ||||| |||||||| | |||||| || ||| || |||
Sbjct 9579 ACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAG 9638
Query 14309 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAA 14367
| ||||| ||| ||| ||| | || || ||| | | || | |||||||| |
Sbjct 9639 AT--ATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGA-ATGTCCTTAGAGA 9695
Query 14368 GATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTT 14427
|| | || || ||| ||| |||||| ||| | ||| |||||||| ||| || |
Sbjct 9696 GA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATAT 9754
Query 14428 CTTTATATAATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485
| | ||| ||| |||| | ||||| | | ||| | |||||| || | ||||||
Sbjct 9755 CATGGTATTCGATAAGAAAGATGACAAAACGGCAAAGGTTTTTCTT--AGTAGTGGTTC 9811
>seq1625
Length=211188
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| |
Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || || |||||||| ||||| || || || ||||| |
Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||||||
Sbjct 134558 CTACCACACGTTCTCC 134573
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|| || ||| |||| || | |||| ||| || | | | || || || ||||| |
Sbjct 132995 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 133054
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| |||
Sbjct 133055 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 133114
Query 13644 ATAAAATCAAATGGATTT 13661
||||| ||||| ||||||
Sbjct 133115 ATAAAGTCAAACGGATTT 133132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479171683424800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |