Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq20608 233 2e-56 seq1625 114 1e-20 >seq20608 Length=25523 Score = 233 bits (258), Expect = 2e-56 Identities = 600/899 (67%), Gaps = 20/899 (2%) Strand=Plus/Plus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||| || |||||||||||||| || ||||||| || ||| | |||||||| ||||| Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983 Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715 |||||| | |||| || || | || | || || | | | ||| || || | Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACG 9043 Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775 || |||||||| | ||||||| |||||||| || | || ||||| || | Sbjct 9044 AATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 9103 Query 13776 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCA 13835 | || | || || | |||||| |||| | | || || || | | |||| Sbjct 9104 TCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGAT--TTCTTTCACTCTCG 9161 Query 13836 --TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 | |||| | || |||||||| || || ||||| ||||| || | | Sbjct 9162 GCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAAC 9221 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 | | |||||| ||||||||||| || |||||||| | || |||| | |||| | || | Sbjct 9222 CTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCT 9281 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || || | |||||| | Sbjct 9282 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGG 9341 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCA 14072 ||| | ||||||||| | | || | ||||| || | ||||| |||||| || Sbjct 9342 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCT 9400 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT- 14131 | || || || | | | ||| | ||||| ||||| || | | ||| | | ||||| Sbjct 9401 GCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTG 9460 Query 14132 -AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190 ||| ||| |||||| || ||||| || | ||| |||||||||| |||||||||||| Sbjct 9461 GAGTCCTT--AATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCA 9518 Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250 | || || || || ||||| || || ||||| | || ||||| | ||| | Sbjct 9519 TGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAAC 9578 Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATGTT 14308 || |||| |||||||| ||||| |||||||| | |||||| || ||| || ||| Sbjct 9579 ACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAG 9638 Query 14309 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAA 14367 | ||||| ||| ||| ||| | || || ||| | | || | |||||||| | Sbjct 9639 AT--ATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGA-ATGTCCTTAGAGA 9695 Query 14368 GATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTT 14427 || | || || ||| ||| |||||| ||| | ||| |||||||| ||| || | Sbjct 9696 GA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATAT 9754 Query 14428 CTTTATATAATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485 | | ||| ||| |||| | ||||| | | ||| | |||||| || | |||||| Sbjct 9755 CATGGTATTCGATAAGAAAGATGACAAAACGGCAAAGGTTTTTCTT--AGTAGTGGTTC 9811 >seq1625 Length=211188 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || || || ||||| | Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 134558 CTACCACACGTTCTCC 134573 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 132995 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 133054 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||| Sbjct 133055 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 133114 Query 13644 ATAAAATCAAATGGATTT 13661 ||||| ||||| |||||| Sbjct 133115 ATAAAGTCAAACGGATTT 133132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479171683424800