Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq20608 219 4e-52 seq1625 111 2e-19 >seq20608 Length=25523 Score = 219 bits (242), Expect = 4e-52 Identities = 578/869 (67%), Gaps = 19/869 (2%) Strand=Plus/Plus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 ||||| || ||||| |||||||| || ||||||| || ||| | |||||||| || || Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983 Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503 |||||| | |||| || || | || | || || | | | ||| || || | Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACG 9043 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 || |||||||| | ||||||| |||||||| || | || ||||| || | Sbjct 9044 AATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 9103 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623 | || | || || | |||||| |||| | | | || || |||| | | || Sbjct 9104 TCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATT-TCTTTC-ACTCTCG 9161 Query 13624 --TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 | |||| | || |||||||| || || ||||| ||||| || | | Sbjct 9162 GCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAAC 9221 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 | | |||||| ||||||||||| || |||||||| | || |||| | |||| | || | Sbjct 9222 CTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCT 9281 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || || | |||||| | Sbjct 9282 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGG 9341 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 ||| | ||||||||| | | || | ||||| | ||||| |||||| || | Sbjct 9342 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTG 9401 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT- 13919 || || || | | | ||| | || || |||||||| | || |||||| ||||| Sbjct 9402 CCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTT-TCTTTG 9460 Query 13920 -AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTA 13978 ||| ||| |||||| || ||||| || | ||| |||||||||| |||||||||| | Sbjct 9461 GAGTCCTT--AATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCA 9518 Query 13979 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATC 14038 | || || || || ||||| ||||| ||||||| || || || | ||| | Sbjct 9519 TGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAAC 9578 Query 14039 TTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATGTT 14096 || ||||||||||||| || || |||||||| | |||||| || ||| || ||| Sbjct 9579 ACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAG 9638 Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAA 14154 | ||||| ||| ||| ||| | || || ||| | ||| || |||||||| Sbjct 9639 AT--ATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCCAGT--GCTGAATGTCCTTAGAG 9694 Query 14155 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATT 14214 ||| | || || ||| ||| |||||| ||| | ||| |||||||| ||| || Sbjct 9695 AGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATA 9753 Query 14215 TCTTTATATAATATAGGAAAAACTACAAA 14243 || | ||| ||| |||| | ||||| Sbjct 9754 TCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq1625 Length=211188 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 134558 CTACCACACGTTCTCC 134573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 132995 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 133054 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 133055 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 133114 Query 13432 ATAAAATCGAATGGATTT 13449 ||||| || || |||||| Sbjct 133115 ATAAAGTCAAACGGATTT 133132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478033804498080