Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 219 4e-52
seq1625 111 2e-19
>seq20608
Length=25523
Score = 219 bits (242), Expect = 4e-52
Identities = 578/869 (67%), Gaps = 19/869 (2%)
Strand=Plus/Plus
Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443
||||| || ||||| |||||||| || ||||||| || ||| | |||||||| || ||
Sbjct 8924 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 8983
Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503
|||||| | |||| || || | || | || || | | | ||| || || |
Sbjct 8984 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACG 9043
Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563
|| |||||||| | ||||||| |||||||| || | || ||||| || |
Sbjct 9044 AATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 9103
Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623
| || | || || | |||||| |||| | | | || || |||| | | ||
Sbjct 9104 TCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATT-TCTTTC-ACTCTCG 9161
Query 13624 --TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681
| |||| | || |||||||| || || ||||| ||||| || | |
Sbjct 9162 GCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAAC 9221
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
| | |||||| ||||||||||| || |||||||| | || |||| | |||| | || |
Sbjct 9222 CTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCT 9281
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||||| || || || || |||||||| ||||| || || | |||||| |
Sbjct 9282 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGG 9341
Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861
||| | ||||||||| | | || | ||||| | ||||| |||||| || |
Sbjct 9342 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTG 9401
Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT- 13919
|| || || | | | ||| | || || |||||||| | || |||||| |||||
Sbjct 9402 CCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTTCCTT-TCTTTG 9460
Query 13920 -AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTA 13978
||| ||| |||||| || ||||| || | ||| |||||||||| |||||||||| |
Sbjct 9461 GAGTCCTT--AATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTATGTTTTCCA 9518
Query 13979 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATC 14038
| || || || || ||||| ||||| ||||||| || || || | ||| |
Sbjct 9519 TGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTGGCTAAAAC 9578
Query 14039 TTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATGTT 14096
|| ||||||||||||| || || |||||||| | |||||| || ||| || |||
Sbjct 9579 ACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAG 9638
Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAA 14154
| ||||| ||| ||| ||| | || || ||| | ||| || ||||||||
Sbjct 9639 AT--ATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCCAGT--GCTGAATGTCCTTAGAG 9694
Query 14155 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATT 14214
||| | || || ||| ||| |||||| ||| | ||| |||||||| ||| ||
Sbjct 9695 AGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATA 9753
Query 14215 TCTTTATATAATATAGGAAAAACTACAAA 14243
|| | ||| ||| |||| | |||||
Sbjct 9754 TCATGGTATTCGATAAGAAAGATGACAAA 9782
>seq1625
Length=211188
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| |
Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| || || || ||||| |
Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 134558 CTACCACACGTTCTCC 134573
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371
|| || ||| |||| || | |||| ||| || | | | || || || ||||| |
Sbjct 132995 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 133054
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| |||
Sbjct 133055 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 133114
Query 13432 ATAAAATCGAATGGATTT 13449
||||| || || ||||||
Sbjct 133115 ATAAAGTCAAACGGATTT 133132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478033804498080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |