Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq20608 291 1e-73 seq2665 129 8e-25 seq1625 123 3e-23 seq7358 111 2e-19 >seq20608 Length=25523 Score = 291 bits (322), Expect = 1e-73 Identities = 626/933 (67%), Gaps = 7/933 (1%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| | | |||| ||||| || | Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTTGACACCACTCCTATCCT 8910 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || | || || | || || || || |||||||| |||||| || ||| | || Sbjct 8911 CCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTC 8970 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||| || || ||| || |||| ||| || || | Sbjct 8971 CATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAG 9030 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| ||||| | |||||| ||||| ||||| | |||||||| || | || || Sbjct 9031 TCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTT 9090 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 ||||| | ||| | || || || || ||||| || || | | | || || Sbjct 9091 TACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTC 9150 Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 | | ||| | || ||| | || | |||||||||||| || || || || Sbjct 9151 TTTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTC 9210 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 ||||| | ||| | |||||| ||||| | ||| |||||||| ||||| || |||| || Sbjct 9211 ACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAG 9270 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || | || || ||||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 9271 TCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 9330 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTG 42252 | |||||||| | | | |||||| | | | | |||| ||||| Sbjct 9331 CGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAA 9390 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 ||||||||| |||||||| ||||||| ||||||| | || |||||||| |||||| | || Sbjct 9391 AGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTT 9450 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| || || |||| || || || || | |||||| ||||||| ||| | || Sbjct 9451 CCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTAT 9510 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||| ||||| || || || || |||||||| ||| || |||| ||| |||||| Sbjct 9511 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTG 9570 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | ||| | || | || ||||| || ||||| || ||||| | |||||| || |||| Sbjct 9571 GCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAG 9630 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 ||||| |||||||||| | || || | || | ||| | | || || || Sbjct 9631 AACATGAGATATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATGTCCTT 9690 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 ||| | | | || || || | | |||||| || || || || |||||||| | ||| Sbjct 9691 AGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCA 9749 Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||||| |||| || | || || ||||| Sbjct 9750 AATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq2665 Length=168205 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| | Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 80587 CTGTTTCTTATACCAT 80602 Score = 109 bits (120), Expect = 7e-19 Identities = 139/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||||||||| |||||| |||| |||| || || || || || | Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 71046 | || | |||||||| | ||| ||||||| | |||| | || || |||| | ||||| Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAATTTCTTGTA 77821 Query 71047 T--TCTGAA 71053 | |||||| Sbjct 77822 TGCTCTGAA 77830 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| | | || | ||| |||||||| || || || || ||||||| Sbjct 84561 CATAGGTTTCATATGGGTCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 84620 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || || | |||||| | || || || || || ||||| |||| Sbjct 84621 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 84680 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 84681 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGGTGGC 84740 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 84741 GTTTATTTGA 84750 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || || || || | | || Sbjct 89090 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 89149 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 89150 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 89209 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 89210 TCCAGGTAAATAGC 89223 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| | || |||| || ||||| || | ||| ||||| || || |||||| Sbjct 95610 CTAGAAAGTTGTGGGCGGTTAGTACCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAAC 95669 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || || || || || || || || |||||||| | || ||| | || || || Sbjct 95670 CACTTCTCGGAAAGAAGGTTATATGTTTCAATAGCAGCATCAATACCTTCTTTGTGAATC 95729 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 95730 CCCACAGAAACCCTCATCAACATATGCTGTGGTCTTTCA 95768 >seq1625 Length=211188 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||||| Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 42207 C 42207 | Sbjct 134558 C 134558 Score = 86.0 bits (94), Expect = 8e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| | | ||||| |||||||| | Sbjct 132994 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCT 133053 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || | || || || || |||||||| ||||||| ||| ||||| || Sbjct 133054 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTC 133113 Query 41836 CATGAAATCAAACGGATT 41853 ||| || ||||||||||| Sbjct 133114 CATAAAGTCAAACGGATT 133131 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || |||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 136424 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 136483 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| || |||| ||| |||||| Sbjct 136484 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 136528 >seq7358 Length=89575 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||| || Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171 Query 42209 ATAAGTCTCTCTCC 42222 | | ||| ||||| Sbjct 30172 ACCACTCTTTCTCC 30185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670360913426720