Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq59329 86.0 2e-12 seq65722 82.4 3e-11 >seq59329 Length=399 Score = 86.0 bits (94), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18404 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 18463 ||||||||||| || ||||| | || || |||||||| |||| | |||| || || Sbjct 229 ATGCGTGATATTCGCCAGGTGTTAGAACGGTGGGGGGCTTGGGTTGTTGATAATCAGGAA 170 Query 18464 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 18523 || ||||| || || |||||||| ||||| || |||||||| |||||||| || Sbjct 169 TCAGTATATTGGTCACCAATAGCTGCCGGGTTTAAAGGGCTGATCCCTGAAAAAGTTAAG 110 Query 18524 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 18583 || | | || |||| ||||| || || | |||| ||| |||||| || Sbjct 109 AGTCGGCAATCATGCAGTGATGATGATGCTCTGGTGATATCCGGCATTATGGCAAAACTG 50 Query 18584 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGT 18630 || | ||||| ||| ||||||| |||| |||| || || || Sbjct 49 AATATCCGTAACAGTGATATGCATGATCTGCTTTTTGACTACTATGT 3 >seq65722 Length=311 Score = 82.4 bits (90), Expect = 3e-11 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10251 GCTTCAGAATACCAGCCACATACTCCACCTTTGCTACTTGATGATAAGGCAAC-GTTATT 10309 |||| | ||| | |||||||| | || ||| | |||| | | | |||| || ||| Sbjct 72 GCTTTACAATCGCTGCCACATAATGCATTTTTTCCACTTCACGTGGAT-CAACTGTGATT 130 Query 10310 GGCCTGTGGTCCTGGTTGATGCTTGTAAATTGGTATTCTCCGTCTCTG-TCATAGCCAAG 10368 ||| ||| | ||||| ||| || |||||||| || |||||| | || || | Sbjct 131 GGCGGGTGAGTATTGTTGACGCTGGTGAATTGGTAACTACCATCTCTGGTTTTATTCA-G 189 Query 10369 AACTTTGATCATGTTGTGTCCTTCAACAGTTCTGACAAACACCTCATCACCCG---GGAA 10425 | ||| | ||| || | ||||||||||| | ||||| |||||||| || | || Sbjct 190 TATTTTTACCATATTCTTACCTTCAACAGTGCGCACAAAGACCTCATCGCCGGATCTGAC 249 Query 10426 TACTTTGGTGTTAGGCTCAATGAGTACATATTCTCCTGATTTTATTCTGGGCCACATGCT 10485 |||| ||||| ||||||| | ||||| || ||||| | || ||||||||||| || Sbjct 250 TACT---GTGTTGGGCTCAACAACCACATACTCACCTGACTGAATCCTGGGCCACATACT 306 Query 10486 GTC 10488 ||| Sbjct 307 GTC 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185050311248288