Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4400 152 1e-31 seq20608 149 1e-30 seq7358 123 6e-23 seq11706 120 7e-22 seq8809 104 5e-17 seq1625 89.7 1e-12 >seq4400 Length=129001 Score = 152 bits (168), Expect = 1e-31 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || || Sbjct 40126 ATACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCG 40067 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || || || || |||||||| || |||||||| || || ||| Sbjct 40066 GAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGA 40007 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| || || || || || | ||||||||| || || Sbjct 40006 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCC 39947 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || || || |||||||||||| Sbjct 39946 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTTTG 39893 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || || Sbjct 40354 ATACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCG 40295 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || || || || |||||||| || |||||||| || || ||| Sbjct 40294 GAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGA 40235 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| || || || || || | ||||||||| || || Sbjct 40234 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCC 40175 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 40174 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || || || ||||| | || || || || || || ||| Sbjct 40549 GTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 40490 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || ||||| || |||||||||||||| ||||| || || Sbjct 40489 GCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 40430 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||||| || || ||||| || || || ||||| || || || || Sbjct 40429 ACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 40370 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 40369 TTCACGAAGATCTGCAT 40353 >seq20608 Length=25523 Score = 149 bits (164), Expect = 1e-30 Identities = 517/800 (65%), Gaps = 10/800 (1%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||||||| || |||| || || |||||| |||||||| || || || ||||| | Sbjct 9645 TTTATATCTCATGTTCTGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTTG 9586 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || ||| || | ||||| || |||||| | |||||| ||||| || || ||||| Sbjct 9585 GTGGAGTGTTTTAGCCAAGAAGTTCAGATTACAGAAGCCCTCTGTTTCTATGGCTTCCAA 9526 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || || ||||| || | ||| || |||| ||||| | || || ||||| || | Sbjct 9525 ATTGCCATGGAAAACATACGTTCTGAAATGTTTAGTCTCCTCATTGACACTTACATTAAG 9466 Query 269021 GATAACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaa 269079 || ||| |||| |||| || || | | || |||| ||| |||| | || Sbjct 9465 GACTCCAAAGAAAGGAAATTTCTCTTCAATGCCATTGAGATG-ATGCCTCGTGTAAAGAA 9407 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTAC---GGAGAAAGGTT 269136 || | || |||||| || ||||| || | | | || | |||||| | | Sbjct 9406 GAAGGCAGATTGGGCTTTGCCTTGGATTGGAGACAAAGAGGCTACCTGTGGAGAACGTGT 9347 Query 269137 AGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTG 269196 || || ||||| | || ||||| || |||||||| || |||||||| | || || || Sbjct 9346 GGTAGCCTTTGCTACGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTG 9287 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256 | | ||||| ||| || |||| || | || || || || ||| | || ||||| || Sbjct 9286 GCTCAAGAATCAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCAGAGA 9227 Query 269257 CGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACC 269316 ||||||||||||| ||||| || || | || ||| | || |||||||| Sbjct 9226 TAAAGGTTTACACTGTGACTTTGCCTGCCCGATGTT---TAAACACCTGCTGCACAAACC 9170 Query 269317 TTCTCAAGATAGAGTATACGAAATTATAGATTCA-GCTGTTTCTGTAGAAACAGAATTTC 269375 || | ||||| | ||||| || || | ||||| ||||| || || | Sbjct 9169 TTTGGAGCCGAGAGTGAAAGAAATCAT-CATCAATTCTGTTAGGATAGAACAGGAGTTCC 9111 Query 269376 TAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATA 269435 | || || || | | | | || | || ||||| | | | |||| | |||| Sbjct 9110 TCACAGAGGCCTTGCCAGTAAAGCTCACTGGGGTGAATTGTACTTTAATGAAGTAGTATA 9051 Query 269436 TTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTG 269495 || | ||||| | || ||| | || || | | ||||| || | || || | Sbjct 9050 TTGAATTCGTGGCAGACAGACTTATGCTGGAGCTGGATTTTAGCAAGGTTTTTAGAGTAG 8991 Query 269496 AAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGA 269555 ||||||| ||| |||||||||| ||| || | |||| ||| |||| ||||| |||| Sbjct 8990 AAAATCCTTTTGACTTTATGGAGACTATCTCCCTGGAAGTGAAGACTAACTTCTTTGAGA 8931 Query 269556 AGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTCA 269615 || | ||| | || ||| || || || || |||| | | ||| ||| ||| | Sbjct 8930 AGAGAGTAGGCAAGTATAGGAGGATAGGAGTGGTGTCAAGCCCAACAGAGAATTCTTTTA 8871 Query 269616 CTACAGATGCAGAATTCTAA 269635 | ||||| || |||||| Sbjct 8870 CCTTGGATGCTGACTTCTAA 8851 >seq7358 Length=89575 Score = 123 bits (136), Expect = 6e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||||| | || |||||||| ||||||||||| || ||||| || || |||||||| Sbjct 30185 GGAGAAAGAGTGGTGGCTTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCT 30126 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 30125 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 30066 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 30065 ATCAGCAGAGATGAAG 30050 >seq11706 Length=58367 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| || | ||| || || ||||| || |||||||| | ||| || ||||| || Sbjct 34754 AGATGAAAAGCAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGC 34695 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGA----TCAGGAGGTATTCCTTCTTTATCCTG 104469 | || |||||||| || || | | || | | |||||| |||||||| |||||||| Sbjct 34694 TAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTTAGGAGGAATTCCTTCCTTATCCTG 34635 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| | ||||||| ||||| || || ||||| ||||| || || || ||||| Sbjct 34634 AATCTTGGTTTTTACA-TTTCTGTTGTGTCCAAGGGTTCAACCTCGAGAGTGATGGTCTT 34576 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| | || |||||||| ||| Sbjct 34575 CCCGGTAAGGGTTTTCATGAAAATCTGCATCTTG 34542 >seq8809 Length=77097 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || | |||||| || |||||||| ||| | || |||| Sbjct 57501 ACAAGATGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGTACATCCATCTTGC 57442 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || | ||| ||| ||||| || || |||||| ||| ||||| || |||| ||| Sbjct 57441 AGCTGCTGGACAGGAAAGATTAGTCTTTGCTGATCAAGAGAAATTCCCTCCTTATGCTGG 57382 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| | ||| | ||||| ||||| Sbjct 57381 ATCTTGGCCTTTACATTTTCTATTGTATCTAAGGGTTCAATCTCAAAAGTAATGGTCTTC 57322 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||| | | || | || ||||||| || Sbjct 57321 CCTGTACGGGCTTCCATGAAACTCTGCATCTT 57290 >seq1625 Length=211188 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||||||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 133137 GTAGAAAATCCGTTTGACTTTATGGAGAATATCTCACTGGAAGGGAAGACTAACTTCTTT 133078 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | ||| ||| | Sbjct 133077 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCGAGCCCAACAGAGAATTCT 133018 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 133017 TTTACCTTGGATGCTGACTTCTAA 132994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150029800366576