Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq39865 132 9e-27 seq75839 123 5e-24 seq80047 102 2e-17 >seq39865 Length=1072 Score = 132 bits (146), Expect = 9e-27 Identities = 143/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 27552 TGACTGGCGTGAACAAAAGCGCCGCACTCGTGAATTTCTCAAAGGTCTGGATCTCGAAGA 27611 ||| ||||| ||||||||||| || || ||||||||||||||| | |||| || |||| Sbjct 885 TGAATGGCGGGAACAAAAGCGGCGGACACGTGAATTTCTCAAATCTATGGAACTGAAAGA 944 Query 27612 CGAAGACGGCAACCGTATCAGCCTGATTGAAAAATTTGACGGCTCGGTC-GCTAACCCTG 27670 || || || ||||| ||||||||||||| ||||| | ||| | || || || || | Sbjct 945 TGAGGAAGGAAACCGCGTCAGCCTGATTGATAAATTCTATGGC-AGTTCAGCAAATCCGG 1003 Query 27671 CGATACGCCGCTGCGAGCTGATGACCCGCATCCGTGGGTTTGAAAATATCTGCAATGAAC 27730 |||| ||| | || ||||| || || | ||||||||||||||||||||||||| Sbjct 1004 CGATCCGCAGAACTGAAATGATGGTGCGGATAAGAGGGTTTGAAAATATCTGCAATGAAC 1063 Query 27731 TCGGATA 27737 |||| || Sbjct 1064 TCGGCTA 1070 >seq75839 Length=248 Score = 123 bits (136), Expect = 5e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 27763 GCACCGTCTAAATATCATGCCACGACTAAAGCGGGATACCGTAACAGCAAATGGAACGGC 27822 ||||| || |||||||| || |||||| || |||||||| ||||||||||||| Sbjct 3 GCACCATCAAAATATCACGCGACGACTCGTCACGGGCACCGTAACCGCAAATGGAACGGA 62 Query 27823 GCCAGCCCGTCGGACACGCAGAACTACCTAACCGGCCTTTGGGCGCGCATTCGTGCCAAG 27882 ||||||| | ||||||||||| ||||| | | ||| ||||| || || Sbjct 63 AGCAGCCCGGCAGACACGCAGAAATACCTCAGTAAAGTATGGAGTAAAATTCGGGCGAAA 122 Query 27883 CTACATCGGGAAGAAATTCGCATTTTCGGCATACGTGTTGCCGAGCCTCATCACGACGGA 27942 || || ||||| || | || || || || || || ||||| |||||||| || |||||| Sbjct 123 CTTCACCGGGATGATTTACGGATCTTTGGTATTCGCGTTGCAGAGCCTCACCATGACGGA 182 Query 27943 ACGCCGCATTGGCACATGCTTATGTTCATGTTGCCAGAAGA 27983 || ||||| ||||| |||||| | || ||| || ||||| Sbjct 183 ACCCCGCACTGGCATATGCTTTTCTTTATGCGCCCGGAAGA 223 >seq80047 Length=232 Score = 102 bits (112), Expect = 2e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 28003 ATCATCCGCGATTATGCATGGGAGGAAGACCGCCACGAACTTAAAAGTGATAAGGCTAAA 28062 ||| | || || ||||| | ||||||| ||||||||| | | ||| || Sbjct 55 ATCCTGCGTGACTATGCCTATCAGGAAGATTTCCACGAACTGACCACACGTAAAGCGCTG 114 Query 28063 AAAGCCCGCTTTCATGCTGAGGCTATCGACCCGGAGAAAGGCAGTGCTACCGGCTATGTC 28122 ||||| || ||||||||||| | ||| || ||||| ||||| |||||| ||||||||| Sbjct 115 AAAGCACGGTTTCATGCTGAAGTTATAGATCCGGATAAAGGTTCTGCTACGGGCTATGTC 174 Query 28123 GCGAAATACATTTCTAAAAACATCGACGGTTATGCTCTCGATGGTGAAACCGATGA 28178 || |||||||| || |||||| | || || || || | |||| ||||| ||||| Sbjct 175 GCCAAATACATATCAAAAAACGTTGATGGGTACGCAATGGATGATGAAAAGGATGA 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97805731769072