Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1509 165 1e-35 seq7786 120 4e-22 >seq1509 Length=219255 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || | || || || |||||||||||| ||| |||| || ||||| || ||| Sbjct 162864 GTCTGGAATAACTGCTCATCGTCCCATTCTGGATGCTCTTGTTTAAGTACATCACATACT 162805 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || || |||||||| |||||||||||||||||||| Sbjct 162804 CTGTTATGTTCCCGAAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGGCCAAAG 162745 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | ||| || ||| || || | || || |||||||| | Sbjct 162744 ACCTCCTGGCCCACAGCAAACTGCAGATGTTCAGGGACGTGAGGCGGGTAGATCATCTTG 162685 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || |||| |||| Sbjct 162684 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAACTATCT 162636 Score = 123 bits (136), Expect = 4e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 161698 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCCTATGATCTGTCTTGAA 161639 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 161638 AAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 161579 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCAC 10183 || |||| | |||| |||||| ||||||||| Sbjct 161578 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCAC 161543 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || | || || || ||||| ||| || | Sbjct 161093 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 161034 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| ||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 161033 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 160974 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 || |||||| ||||||||| ||||| Sbjct 160973 GGTGGGCTGGCAATCAAATGTGATCT 160948 >seq7786 Length=85644 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || || || ||||| || |||||||| | || | Sbjct 27091 TCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAGTACTCTGGAG 27032 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| |||| ||| |||||| ||||||||||| || ||||| | || | || | Sbjct 27031 AACAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATTTCTATCATAC 26972 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| ||| || || || | | | || | ||| ||||||| Sbjct 26971 TCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGAGAAGCAGCCCCGGGTAGAACTCCA 26912 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||| || |||||||| || || || ||||| | || || ||||| |||||| Sbjct 26911 AAGCATCAATGTCTCCATATAGATCCTCCAGTTCAGTTGCCATCTCCTTCTCTCCT 26856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707703159215680