Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 145 1e-30
seq14472 132 8e-27
seq6787 129 9e-26
seq19235 127 3e-25
seq6821 125 1e-24
seq22830 89.7 8e-14
>seq3668
Length=142850
Score = 145 bits (160), Expect = 1e-30
Identities = 178/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || || |||||||| || ||
Sbjct 86578 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATTACCAAGCCCGCCAT 86519
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| | || |||||||||||||| |||| || | | || |||||||
Sbjct 86518 CCGCCGCCTGGCAAGGCGCGGTGGAGTCAAGCGCATCTCCGGCCTCATTTACGAAGAGAC 86459
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | || || ||| ||| |||| |||||| || ||| |||||
Sbjct 86458 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGATGCTGTCACCTACACCGA 86399
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| |||||||| | ||||| ||| | || || || ||
Sbjct 86398 GCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTCTACGCACTCAAGCGCCAGGG 86339
Query 16672 CCG 16674
|||
Sbjct 86338 CCG 86336
>seq14472
Length=45083
Score = 132 bits (146), Expect = 8e-27
Identities = 188/262 (72%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || |||||||| || || |
Sbjct 17845 CGCCAAGCGCCACCGCAAGGTC-CTGCGGGACAACATCCAGGGCATCACCAAACCCGCCA 17903
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || || || || || || || |||||||| ||||||| | |||| || ||||
Sbjct 17904 TCCGCCGCCTTGCCCGGCGCGGAGGGGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGA 17963
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| ||| ||| |||| || || || ||| ||||
Sbjct 17964 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCG 18023
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | ||||| || | || || || |
Sbjct 18024 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 18083
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | || || |||||
Sbjct 18084 GCCGCACTCTGTACGGCTTTGG 18105
>seq6787
Length=94921
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| || || |||| || || || |||||||| || || |||||||| || ||
Sbjct 56685 CGCTAAACGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATTACCAAGCCCGCCAT 56626
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| || || || || || || |||||||| ||||||| | |||| || ||||
Sbjct 56625 CCGTCGCCTTGCCCGGCGCGGAGGGGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 56566
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 56565 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 56506
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| | ||||| | ||||| || | || || || ||
Sbjct 56505 GCACGCCAAGCGCAAGACGGTCACGGCAATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 56446
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 56445 CCGCACCCTCTACGGTTTCGG 56425
>seq19235
Length=29390
Score = 127 bits (140), Expect = 3e-25
Identities = 178/250 (71%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| || || || ||
Sbjct 8841 CTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCATCCGCCGTCTTGCCCGGCGCGGC 8782
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | | || || |||| || | || ||||| | |||
Sbjct 8781 GGGGTCAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 8722
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || || ||||| |||
Sbjct 8721 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 8662
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | ||||| | ||||| || | || || || ||||| | | |||||||| ||
Sbjct 8661 ACGGCTATGGACGTGGTCTACGCGCTTAAGCGCCAGGGCCGCACCCTCTATGGTTTCGGC 8602
Query 16694 AGTTAATCTT 16703
| |||| ||
Sbjct 8601 GGCTAATGTT 8592
>seq6821
Length=94590
Score = 125 bits (138), Expect = 1e-24
Identities = 175/243 (72%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| || |||| | |||| | || || |||||||| |||||||||||||| ||
Sbjct 67104 GCTAAGCGCCACCGCA-AGGTCTTGAGGGACAATATCCAAGGGATCACCAAGCCAGCGAT 67162
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || || || || ||||| ||||| ||||| | || || | | || || ||||
Sbjct 67163 TCGGCGCCTTGCCCGGCGTGGAGGAGTGAAGCGGATTTCCGGCCTAATTTACGAGGAGAC 67222
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 67223 CCGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGA 67282
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || |||||
Sbjct 67283 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTGTACGCGCTCAAGCGACAAGG 67342
Query 16672 CCG 16674
||
Sbjct 67343 ACG 67345
>seq22830
Length=20272
Score = 89.7 bits (98), Expect = 8e-14
Identities = 166/245 (68%), Gaps = 9/245 (4%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| | ||
Sbjct 14189 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCCTCCAT 14248
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || | || | || || |||||||| |||| || | |||| || ||||
Sbjct 14249 CCGCCGCCTTGTCCGGTGCGGCGGGGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 14308
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| ||| ||| |||| || || || ||| |||||
Sbjct 14309 CCGCGGAGTGCTGAAG---------GAGAACGTGATCCGGGACGCCGTCACCTACACCGA 14359
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| || |||| | ||||| || | || || || ||
Sbjct 14360 GCACGCCAAGCGCAAGACAGTCACGGCCGTGGACGTGGTCTAGGCGCTCAAGCGCCAGGG 14419
Query 16672 CCGTA 16676
|||||
Sbjct 14420 CCGTA 14424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78990377910996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |