Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3668 145 1e-30 seq14472 132 8e-27 seq6787 129 9e-26 seq19235 127 3e-25 seq6821 125 1e-24 seq22830 89.7 8e-14 >seq3668 Length=142850 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || || |||||||| || || Sbjct 86578 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATTACCAAGCCCGCCAT 86519 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | || |||||||||||||| |||| || | | || ||||||| Sbjct 86518 CCGCCGCCTGGCAAGGCGCGGTGGAGTCAAGCGCATCTCCGGCCTCATTTACGAAGAGAC 86459 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| |||||| || ||| ||||| Sbjct 86458 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGATGCTGTCACCTACACCGA 86399 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | ||||| ||| | || || || || Sbjct 86398 GCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTCTACGCACTCAAGCGCCAGGG 86339 Query 16672 CCG 16674 ||| Sbjct 86338 CCG 86336 >seq14472 Length=45083 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || |||||||| || || | Sbjct 17845 CGCCAAGCGCCACCGCAAGGTC-CTGCGGGACAACATCCAGGGCATCACCAAACCCGCCA 17903 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || || |||||||| ||||||| | |||| || |||| Sbjct 17904 TCCGCCGCCTTGCCCGGCGCGGAGGGGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGA 17963 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 17964 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCG 18023 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 18024 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 18083 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || || ||||| Sbjct 18084 GCCGCACTCTGTACGGCTTTGG 18105 >seq6787 Length=94921 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || || |||| || || || |||||||| || || |||||||| || || Sbjct 56685 CGCTAAACGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATTACCAAGCCCGCCAT 56626 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || || || || || || |||||||| ||||||| | |||| || |||| Sbjct 56625 CCGTCGCCTTGCCCGGCGCGGAGGGGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 56566 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 56565 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 56506 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 56505 GCACGCCAAGCGCAAGACGGTCACGGCAATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 56446 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 56445 CCGCACCCTCTACGGTTTCGG 56425 >seq19235 Length=29390 Score = 127 bits (140), Expect = 3e-25 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| || || || || Sbjct 8841 CTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCATCCGCCGTCTTGCCCGGCGCGGC 8782 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | | || || |||| || | || ||||| | ||| Sbjct 8781 GGGGTCAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 8722 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 8721 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 8662 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | ||||| || | || || || ||||| | | |||||||| || Sbjct 8661 ACGGCTATGGACGTGGTCTACGCGCTTAAGCGCCAGGGCCGCACCCTCTATGGTTTCGGC 8602 Query 16694 AGTTAATCTT 16703 | |||| || Sbjct 8601 GGCTAATGTT 8592 >seq6821 Length=94590 Score = 125 bits (138), Expect = 1e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || |||| | |||| | || || |||||||| |||||||||||||| || Sbjct 67104 GCTAAGCGCCACCGCA-AGGTCTTGAGGGACAATATCCAAGGGATCACCAAGCCAGCGAT 67162 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || || || ||||| ||||| ||||| | || || | | || || |||| Sbjct 67163 TCGGCGCCTTGCCCGGCGTGGAGGAGTGAAGCGGATTTCCGGCCTAATTTACGAGGAGAC 67222 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 67223 CCGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGA 67282 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || ||||| Sbjct 67283 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTGTACGCGCTCAAGCGACAAGG 67342 Query 16672 CCG 16674 || Sbjct 67343 ACG 67345 >seq22830 Length=20272 Score = 89.7 bits (98), Expect = 8e-14 Identities = 166/245 (68%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| | || Sbjct 14189 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCCTCCAT 14248 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || | || | || || |||||||| |||| || | |||| || |||| Sbjct 14249 CCGCCGCCTTGTCCGGTGCGGCGGGGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 14308 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||| ||| |||| || || || ||| ||||| Sbjct 14309 CCGCGGAGTGCTGAAG---------GAGAACGTGATCCGGGACGCCGTCACCTACACCGA 14359 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| || |||| | ||||| || | || || || || Sbjct 14360 GCACGCCAAGCGCAAGACAGTCACGGCCGTGGACGTGGTCTAGGCGCTCAAGCGCCAGGG 14419 Query 16672 CCGTA 16676 ||||| Sbjct 14420 CCGTA 14424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78990377910996