Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 176 5e-39
seq22624 98.7 1e-15
seq7358 86.0 7e-12
>seq20608
Length=25523
Score = 176 bits (194), Expect = 5e-39
Identities = 522/803 (65%), Gaps = 6/803 (1%)
Strand=Plus/Plus
Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186
||| || |||||||| || | ||| ||| ||| | |||||| | ||| || |
Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTTGACACCACTCCTATCCT 8910
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
||| | | ||||| || || || || || ||||| |||||| || |||| ||
Sbjct 8911 CCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTC 8970
Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306
|||||| ||||| |||||||| | |||| | || || || |||| || | ||||
Sbjct 8971 CATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCC-AGCATAA 9029
Query 21307 -TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365
||| ||||| || ||||| ||||| | |||||| |||||||| || | | |
Sbjct 9030 GTCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCT 9089
Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425
|||| || | || | ||| | || | |||||| || | | | || || |
Sbjct 9090 TTACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTT 9149
Query 21426 TTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAAT 21485
| | | || | ||| | || | |||||||||||| || ||||| |
Sbjct 9150 CTTTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGT 9209
Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545
|||| || ||||||| ||| || || || | |||||| |||||||| | ||| |||| |
Sbjct 9210 CACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGA 9269
Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605
|||| || || | ||| |||||||| ||||| | || |||||||| || || || |
Sbjct 9270 GTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCA 9329
Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665
| | |||||| || || | ||||| || | |||| ||||| || |||||
Sbjct 9330 CCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCA 9389
Query 21666 CTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724
||||| | |||||| |||||| | || | || | ||||| || || || |||
Sbjct 9390 AAGCCCAATCTGCCTTCTTCTTT-ACACGAGGCATCATCTCAATGGCATTGAAGAGAAAT 9448
Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784
|| |||| | || | ||| |||| ||||||||||| ||
Sbjct 9449 TTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGT 9508
Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC- 21843
|| ||||| || || || || || || || ||||| || |||| | ||||| ||
Sbjct 9509 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCT 9568
Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903
| ||||| | | ||||||||||||||||||| |||||||| | ||||| || ||
Sbjct 9569 TGGCTAAAA-CACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGC 9627
Query 21904 CAATATATTTTTTATAAAATATC 21926
|| | || |||||||||||
Sbjct 9628 CAGAACATGAGATATAAAATATC 9650
>seq22624
Length=20715
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 130653 aGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
||||| || | | ||||| | ||||||| ||| | || || | |||||| | | |
Sbjct 20383 AGTTCCTCCGCAGATTCAAACTGAACAAGATGAGCTTCTAAAGAGGCACAAAAGATCTGG 20442
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| |||||||||||| ||| |||| |||||| ||||| ||||||| |||||| ||||||
Sbjct 20443 CTGAATGTCCAATTTCTTGTTTCTTAAGAAAAATAAAAACATTTATTTCCAAACCCAATC 20502
Query 130773 CATCCCTTTGGGCAAGTAACAT 130794
||| | |||||||||||||
Sbjct 20503 CATGTTTGGGGGCAAGTAACAT 20524
>seq7358
Length=89575
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| |||||||| | ||| || ||| | | | |
Sbjct 22366 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCCGTTGTTTCTGCCATGACTGCAAAAC 22425
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||| | ||| || || |||||||| || ||||| || || || ||
Sbjct 22426 GCTGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 22485
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 22486 CCATAAAATCAAAAGGATTTTC 22507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531283981237280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |