Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq20608 176 5e-39 seq22624 98.7 1e-15 seq7358 86.0 7e-12 >seq20608 Length=25523 Score = 176 bits (194), Expect = 5e-39 Identities = 522/803 (65%), Gaps = 6/803 (1%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | |||||| | ||| || | Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTTGACACCACTCCTATCCT 8910 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| | | ||||| || || || || || ||||| |||||| || |||| || Sbjct 8911 CCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTC 8970 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||||| ||||| |||||||| | |||| | || || || |||| || | |||| Sbjct 8971 CATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCC-AGCATAA 9029 Query 21307 -TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||| ||||| || ||||| ||||| | |||||| |||||||| || | | | Sbjct 9030 GTCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCT 9089 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 |||| || | || | ||| | || | |||||| || | | | || || | Sbjct 9090 TTACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTT 9149 Query 21426 TTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAAT 21485 | | | || | ||| | || | |||||||||||| || ||||| | Sbjct 9150 CTTTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGT 9209 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 |||| || ||||||| ||| || || || | |||||| |||||||| | ||| |||| | Sbjct 9210 CACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGA 9269 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 |||| || || | ||| |||||||| ||||| | || |||||||| || || || | Sbjct 9270 GTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCA 9329 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 | | |||||| || || | ||||| || | |||| ||||| || ||||| Sbjct 9330 CCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCA 9389 Query 21666 CTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724 ||||| | |||||| |||||| | || | || | ||||| || || || ||| Sbjct 9390 AAGCCCAATCTGCCTTCTTCTTT-ACACGAGGCATCATCTCAATGGCATTGAAGAGAAAT 9448 Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784 || |||| | || | ||| |||| ||||||||||| || Sbjct 9449 TTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGT 9508 Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC- 21843 || ||||| || || || || || || || ||||| || |||| | ||||| || Sbjct 9509 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCT 9568 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 | ||||| | | ||||||||||||||||||| |||||||| | ||||| || || Sbjct 9569 TGGCTAAAA-CACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGC 9627 Query 21904 CAATATATTTTTTATAAAATATC 21926 || | || ||||||||||| Sbjct 9628 CAGAACATGAGATATAAAATATC 9650 >seq22624 Length=20715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 130653 aGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 ||||| || | | ||||| | ||||||| ||| | || || | |||||| | | | Sbjct 20383 AGTTCCTCCGCAGATTCAAACTGAACAAGATGAGCTTCTAAAGAGGCACAAAAGATCTGG 20442 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||||| ||| |||| |||||| ||||| ||||||| |||||| |||||| Sbjct 20443 CTGAATGTCCAATTTCTTGTTTCTTAAGAAAAATAAAAACATTTATTTCCAAACCCAATC 20502 Query 130773 CATCCCTTTGGGCAAGTAACAT 130794 ||| | ||||||||||||| Sbjct 20503 CATGTTTGGGGGCAAGTAACAT 20524 >seq7358 Length=89575 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| |||||||| | ||| || ||| | | | | Sbjct 22366 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCCGTTGTTTCTGCCATGACTGCAAAAC 22425 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||| | ||| || || |||||||| || ||||| || || || || Sbjct 22426 GCTGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 22485 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 22486 CCATAAAATCAAAAGGATTTTC 22507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531283981237280