Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2665 96.9 9e-15 seq1625 87.8 5e-12 seq20608 84.2 6e-11 >seq2665 Length=168205 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 87986 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 87927 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 87926 CTTTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 87867 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 87866 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 87834 >seq1625 Length=211188 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | || ||||| | ||| ||||| || ||||||||||| | ||| | Sbjct 134570 GAACGTGTGGTAGCCTTTGCCGCGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 134511 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| ||||| || ||||| ||||| | ||| Sbjct 134510 ATATTCTGGCTCAAGAAACGAGGACTCATGCCTGGTCTCACATTTTCCAATGAACTTATT 134451 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 134450 AGCAGAGATGAGG 134438 >seq20608 Length=25523 Score = 84.2 bits (92), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT--GA-ACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| || |||| || | | | | ||| Sbjct 9411 AAGAAGAAGGCAGATTGGGCTTTGCCTTGGATTGGAGACAAAGAGGCTACCTGTGGAGAA 9352 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| | | || |||||| ||| ||||| || ||||||||||| | ||| |||| Sbjct 9351 CGTGTGGTAGCCTTTGCTACGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATA 9292 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || || | | | | |||| ||||| || ||||| ||||| | |||||| Sbjct 9291 TTCTGGCTCAAGAATCAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGC 9232 Query 22612 CGAGATGAGGGT 22623 ||||| | ||| Sbjct 9231 AGAGATAAAGGT 9220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301804380147704