Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_007581.1 Length=185683 Score E Sequences producing significant alignments: (Bits) Value seq78772 150 2e-31 seq77016 134 2e-26 >seq78772 Length=236 Score = 150 bits (166), Expect = 2e-31 Identities = 176/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 101478 ATAATTTCTCTA---TACCAA-TTATGCTATTTTATAATTACTAAGATTTATACTAGCAT 101533 ||| ||| |||| |||||| |||| |||||||||| || | |||||| || ||||| Sbjct 236 ATACTTTTTCTACATTACCAAGTTATACTATTTTATAGTTTCCAAGATTAATCGAAGCAT 177 Query 101534 TTTTATCTCTATCAATAACTAAACCACATTTATCACACTTATAAACTCTATCAGATAGTT 101593 ||||||||||||| || | ||| |||||| ||||| ||||| ||||| || |||| Sbjct 176 TTTTATCTCTATCTATTATCAAATTACATTTTTCACATTTATACACTCTGTCTTTAAGTT 117 Query 101594 TTAAATCTTTCTTAATAGCTCCACAACAACTACAAGTTTTACTACTAGGATAAAATCTAT 101653 |||||| ||||| || ||||||||| ||||||||||| |||||||| |||| Sbjct 116 TTAAATTCTTCTTGATGTTTCCACAACAGCTACAAGTTTTTGATGATGGATAAAACCTAT 57 Query 101654 CAACTTGTATGAATTTTATATTGTTCCATTCACATTTATACTTCATTTGCCTTATA 101709 | |||| || |||| || | | ||||||||||||||||| || | |||| Sbjct 56 CCGCTTGAATAAATTCAATTCCACTGAACTCACATTTATACTTCATCTGACGTATA 1 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/110 (81%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 126366 ACATATATATAATCTGTCTTTAAGCTTTAAAT-CTGATTTAACTTGACCACAACAACTAC 126424 |||| |||| | |||||||||||| ||||||| || || | || |||||||| |||| Sbjct 142 ACATTTATACACTCTGTCTTTAAGTTTTAAATTCTTCTTGATGTTT-CCACAACAGCTAC 84 Query 126425 AAGTTTTTGATGATGGATACCATTTATCAGCTTCAACAAATTTAATTCCA 126474 ||||||||||||||||||| | |||| |||| || ||||| ||||||| Sbjct 83 AAGTTTTTGATGATGGATAAAACCTATCCGCTTGAATAAATTCAATTCCA 34 >seq77016 Length=243 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 101773 ACATTTAAGTCTTCCATTACCACTCTGTGTGGCtttaattttattattttatttgtagtt 101832 || ||||| |||||||| || ||||| | ||| |||||||| | || | ||| ||| Sbjct 238 ACGTTTAAATCTTCCATAACTACTCTATATGGTTTTAATTTAACTACACTTGCTGTGGTT 179 Query 101833 tgatgtatgtggttatttctaatattattaagttttCTAtaaataagtcttattttatgt 101892 || |||||||| || | ||| ||||| | ||| || |||| |||| | |||| | | Sbjct 178 TGGTGTATGTGATTGTCTCTTATATTTGATAATTTCCTGTAAAGAAGTTTAATTTGTTTT 119 Query 101893 tctaatttaataatattattagttttaataaatttgttattttgcttattcattaAGTAC 101952 ||||||||||| ||||| |||||||||| ||||||||| | ||||| | || Sbjct 118 TCTAATTTAATTATATTCTTAGTTTTAACAAATTTGTTTCCGTCTTTATTTGCTTCATAT 59 Query 101953 TTTCTTGAAACTTGTCTTTGTA 101974 ||||||||||| |||||||||| Sbjct 58 TTTCTTGAAACCTGTCTTTGTA 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593368701104160