Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4400 138 1e-27 seq7134 111 1e-19 >seq4400 Length=129001 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||||||||| | || | ||||||||| || || |||||||||||| Sbjct 40581 AGCCACCCCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGG 40522 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| ||||| ||||||||||| || |||| | | ||||||||| |||| Sbjct 40521 AGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAG 40462 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || ||| || ||| | | ||| | |||||| ||| ||| | Sbjct 40461 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCA 40402 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 40401 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| ||||| | || | ||||||||| || || |||||||||||| Sbjct 40123 CCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40064 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | | ||||||||| |||||| Sbjct 40063 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 40004 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||| | | ||| | |||||| ||| ||| | Sbjct 40003 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 39944 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 39943 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 39897 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| ||||| | || | ||||||||| || || |||||||||||| Sbjct 40351 CCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40292 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | | ||||||||| |||||| Sbjct 40291 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 40232 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||| | | ||| | |||||| ||| ||| | Sbjct 40231 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40172 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 40171 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 >seq7134 Length=91468 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 |||||| || | || | ||| ||||| || || |||||||| || || ||||| Sbjct 86518 ACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCC 86459 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || ||||| || || || |||| || | ||||||||| || ||||| || ||||| Sbjct 86458 GTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTT 86399 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| ||| ||||| | ||| | || || ||| ||| | || | ||| | Sbjct 86398 TTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 86339 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| |||||||| | ||||||||||| |||||||| Sbjct 86338 GGTCTTACCGGTCAACGTTTTTACGAAGATCTGCAT 86303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471465430356480