Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7134 114 1e-20 seq4400 102 7e-17 >seq7134 Length=91468 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| |||||||| || || ||||||||||| | | Sbjct 86529 CCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 86470 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||| ||||| || ||| | || | || ||| ||||| || Sbjct 86469 AGAGTGCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 86410 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||| || || | | ||| || | | | ||||| | ||||||| Sbjct 86409 ATGCCCTCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 86350 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || ||||||| |||||| || || ||||||||| Sbjct 86349 TCCAGGGTGATGGTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 86302 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | | Sbjct 86757 CCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 86698 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||| || || || ||| | || | || ||| ||||| || Sbjct 86697 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 86638 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 86637 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCA 86580 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 86579 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | | Sbjct 86985 CCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 86926 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||| || || || ||| | || | || ||| ||||| || Sbjct 86925 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 86866 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 86865 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCA 86808 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 86807 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| |||||||| || || ||||||||||| | | Sbjct 87213 CCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 87154 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||| ||||| || ||| | || | || ||| ||||| || Sbjct 87153 AGAGTGCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 87094 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 87093 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCA 87036 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 87035 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 >seq4400 Length=129001 Score = 102 bits (112), Expect = 7e-17 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||| || || |||||||| |||| | || | | ||||||| || Sbjct 40099 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGC 40040 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || || || Sbjct 40039 TTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 39980 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | || |||| ||||||| |||| ||||||||| || |||| Sbjct 39979 GC--CTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 39922 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || || || |||||||||||| Sbjct 39921 TGAGGGTCTTCACGAAGATCTGCATTTTG 39893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404629983708280