Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7636 118 7e-22 seq7612 93.3 3e-14 seq13280 89.7 3e-13 seq5134 89.7 3e-13 seq33536 86.0 4e-12 seq10633 86.0 4e-12 >seq7636 Length=87160 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG-----GGGTAATCTCGT 25956 |||||||||||||||||||||||||| || |||||||| |||| || |||||||| Sbjct 46481 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGACAGTGGAGAATCTCGT 46422 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 46421 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 46387 >seq7612 Length=87096 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 ||| ||| |||| ||||||| ||||||||||||||||| |||| ||||||||||| ||| Sbjct 81405 TCTATTCGAAGTACTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCGGG 81346 Query 20010 AATATTTAGCCTTA 20023 | |||||||||||| Sbjct 81345 AGTATTTAGCCTTA 81332 >seq13280 Length=50216 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||| | Sbjct 50078 CTCTCTCTTCAAAGTCCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTTGT 50137 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 50138 GCCGGTATTTAGCCTTA 50154 >seq5134 Length=116349 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||| ||||||||| | |||||||||| |||| ||||||| Sbjct 51843 CTCTCTCTTCAAAGTCCTTTTCTACTTTCCCTTATGGTACTTGTTGACTATTGGTCTCGT 51784 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 51783 GCTGGTATTTAGCCTTA 51767 >seq33536 Length=4287 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||| | || |||| ||||||| Sbjct 828 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTATGTATTGACTATTGGTCTCGT 769 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 768 GCCGGTATTTAGCCTTA 752 >seq10633 Length=64552 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/119 (77%), Gaps = 11/119 (9%) Strand=Plus/Plus Query 19910 TATTATTCATTGTACTTAATTGCGGTTATTGTCATTTCT---CTCTCTTCAAAGTTCTTT 19966 |||| ||| || | |||||| ||||| | |||| | |||||||||||||||||| Sbjct 11417 TATTTTTCTTTTT--TTAATT----TTATTTTTATTTTTATTCTCTCTTCAAAGTTCTTT 11470 Query 19967 TCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT--TAGCCTTA 20023 |||||||||| | |||||||||||| || ||||||| | | | |||| |||||||| Sbjct 11471 TCAACTTTCCTTTACGGTACTTGTTGACTGTCGGTCTTGTGCCAGTATTTATAGCCTTA 11529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334568489017532