Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20608 295 8e-75 seq2665 131 2e-25 seq1625 114 2e-20 seq7358 107 2e-18 >seq20608 Length=25523 Score = 295 bits (326), Expect = 8e-75 Identities = 426/599 (71%), Gaps = 4/599 (1%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 |||||||||||| || || || || ||||||| ||| | ||||| ||||| | ||| Sbjct 9185 TGTTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCA 9244 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 |||||||| ||||| || |||| || || | || || ||||| ||||| || ||||| Sbjct 9245 TTGGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAA 9304 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 32822 || ||||||||||| |||||||| || | |||||||| | | | |||||| | | Sbjct 9305 GAACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTA 9364 Query 32823 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 | | |||| ||||| ||||||||| |||||||| ||||||| |||||| Sbjct 9365 GCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATC 9424 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 |||| || ||||| |||||| | || |||| || || |||| || || ||||| Sbjct 9425 ATCTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATG 9484 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | |||||| ||||||| ||| | |||||||| ||||| ||||| || || ||||| || Sbjct 9485 AGGAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 9544 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 || || |||||||| |||||| | ||| | || | || |||||||| ||||| Sbjct 9545 AGGGCTTCTGTAATCTGAACTTCTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATG 9604 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || ||||| | |||||| || |||| ||||| |||||||||| | || || | | Sbjct 9605 CCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATATCTCTCCTCAAGCTCT 9664 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 || | ||| | | || || ||||| | | |||| || || ||| |||||| || Sbjct 9665 AGGGCTTCCCAGTGCTGAATGTCCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAA 9723 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| || |||||||| | ||| || ||||| |||| || |||| || ||||| Sbjct 9724 GCCTCCATTTTCTTATACATCTGCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq2665 Length=168205 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| | Sbjct 80467 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATG 80526 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 80527 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 80586 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 80587 CTGTTTCTTATACCATA 80603 Score = 114 bits (126), Expect = 2e-20 Identities = 140/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 77642 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 77701 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 77702 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCGGCTGCCATCTTGAGAACAGTTT 77761 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 62095 | || | |||||||| | ||| ||||||| | |||| | || || |||| | ||||| Sbjct 77762 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAATTTCTTGTA 77821 Query 62096 T--TCTGAA 62102 | |||||| Sbjct 77822 TGCTCTGAA 77830 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || || || || | | Sbjct 89086 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 89145 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 89146 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 89205 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 89206 AGGCTCCAGGTAAATAGC 89223 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 99856 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 99915 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | |||||| | || || ||| |||| || |||| ||| || | Sbjct 99916 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 99975 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| || || || || ||||| Sbjct 99976 GTTCCACAGTGGTGACCCCACTGTATAAGCCCTGAATTACTTTCAT 100021 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| | | | || || |||||||| || || || || || || | Sbjct 84561 CATAGGTTTCATATGGGTCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 84620 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||| | |||||| | || || || | || ||||| |||| Sbjct 84621 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 84680 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 84681 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGGTGGC 84740 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 84741 GTTTATTTGA 84750 >seq1625 Length=211188 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 32803 C 32803 | Sbjct 134558 C 134558 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 136424 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 136483 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | || || |||||||| |||||| Sbjct 136484 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 136528 >seq7358 Length=89575 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||| || Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171 Query 32805 ATAAGTCTCTCTCC 32818 | | ||| ||||| Sbjct 30172 ACCACTCTTTCTCC 30185 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 43521 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGGG 43580 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || |||||||| || ||||||| Sbjct 43581 TACTGGATTGGAAAGATGACAAATC 43605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632897208651200