Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20608 226 3e-54 seq1625 100 3e-16 >seq20608 Length=25523 Score = 226 bits (250), Expect = 3e-54 Identities = 423/611 (69%), Gaps = 8/611 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| |||||||| |||||||||| |||| || || || | ||||| ||||| | Sbjct 9199 GCAGGCAAAGTCACAGTGTAAACCTTTATCTC-TGCTAATAAGTTCATTGGAAAATGTGA 9257 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 ||| || | |||||| | ||||||||||| |||||||| |||||| ||||||||| | Sbjct 9258 GACCAGGCACGAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGA 9317 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || |||||||| | ||||| || || | |||||| || | | || || | Sbjct 9318 AGATTCCTTCCACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTC 9377 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| ||||||||||| || || ||||| | || ||| | | || || || | Sbjct 9378 CAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCAT 9437 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | | | || | || || ||||| || || || | ||| | ||| Sbjct 9438 TGAAGAGAAATTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACA 9497 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||||||| | | || ||||| ||||||||||| || |||||||| ||||| || | Sbjct 9498 TTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAA 9557 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| |||||||| ||| | ||| || | |||||||| ||||| ||||| || || Sbjct 9558 TCTGAACTTCTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTG 9617 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAA 93568 |||| ||||||| | ||| |||||||| | |||| || | || || | | ||||| Sbjct 9618 CAAAGAAAGCCAGAACATGAGATATAAAATATCTCTCCTCAAGCTCTAGGGCT-TCCCAG 9676 Query 93569 T-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 | | || | || || || ||| | || || || | | |||||| || || || ||| Sbjct 9677 TGCTGA-ATGTCCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTT 9734 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 || ||||| | ||| || || || |||| || |||| ||||||||||| | |||| Sbjct 9735 CTTATACATCTGCCAAATATCATGGTATTCGATAAGAAAGATGACAAAACGGCAAAGGTT 9794 Query 93688 ATCTTTTAGTA 93698 | | |||||| Sbjct 9795 -TTTCTTAGTA 9804 >seq1625 Length=211188 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | ||| || | |||||||||||||||||||| ||||| || ||| Sbjct 134458 TCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 134517 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || || | |||||| Sbjct 134518 AAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCTACCACACGTTC 134570 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 136430 ATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 136489 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | ||||| || |||||||||||||| Sbjct 136490 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCTTG 136530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556215036373280