Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq37096 107 5e-19 seq40015 95.1 3e-15 >seq37096 Length=1890 Score = 107 bits (118), Expect = 5e-19 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41025 AGATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGA 41084 ||| |||||||||| ||| |||||||| |||||||||| |||||||| ||||| ||||| Sbjct 893 AGAAAGAAATAGCTATTCGAAAACTGACAATGATGCAACCTTTATGAGGATGAAAGAAGA 952 Query 41085 CCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACA 41126 ||||||| ||||| ||| | ||||||||||| || |||| Sbjct 953 CCATATGCTTAATGGACAATTAAAGCCAGGATATAACATACA 994 >seq40015 Length=1056 Score = 95.1 bits (104), Expect = 3e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 41026 GATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGAC 41085 ||||||||||| ||||||||||| ||| ||| |||||||||||| | ||||| || || Sbjct 157 GATAGAAATAGTTTTTCTAAAACAGATATTGAAGCAACTTTTATGCGTATGAAAGATGAT 216 Query 41086 CATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGC 41132 || ||| |||| || ||| | ||||| | |||||| | ||||| || Sbjct 217 CACATGCAAAACGGACAATTAAAGCCTGCTTACAATGTTCAAATTGC 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143262797965816