Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4400 131 4e-25 >seq4400 Length=129001 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || |||| ||| ||||| || || || | || || || || ||| Sbjct 40087 TCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 40028 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| ||||||||||||||||| || || |||||||| Sbjct 40027 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 39968 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||| | || || || || ||||| ||||| ||||| || ||||| ||| Sbjct 39967 TCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACG 39908 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 39907 AAGATCTGCATTTTG 39893 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || |||| ||| ||||| || || || | || || || || ||| Sbjct 40543 TCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 40484 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || ||||| ||| ||||||||||||||||| || || |||||| Sbjct 40483 ATGAGCCTCTGCTGG---TCTGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACG 40427 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||||| | || || || || ||||| ||||| ||||| || ||||| Sbjct 40426 TTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTC 40367 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 40366 ACGAAGATCTGCAT 40353 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || |||| ||| ||||| || || || | || || || || ||| Sbjct 40315 TCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 40256 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| ||||||||||||||||| || || |||||||| Sbjct 40255 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 40196 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||| | || || || || ||||| ||||| ||||| || ||||| ||| Sbjct 40195 TCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACG 40136 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 40135 AAGATCTGCAT 40125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178252214119416