Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq4400 102 9e-17
seq15599 95.1 1e-14
seq12518 91.5 2e-13
seq7134 91.5 2e-13
seq12135 89.7 6e-13
>seq4400
Length=129001
Score = 102 bits (112), Expect = 9e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || || | ||| | ||| | |||| || ||| || || || |||||||| |
Sbjct 40124 ACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGA 40065
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || |||||||| ||||| || ||||| | ||||||||||| ||
Sbjct 40064 GAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGG 40005
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || || ||| ||| || || | || | | || ||||| | |||||
Sbjct 40004 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCAC 39945
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| | |||||||| ||||| || || ||||| || ||||| |||||||| ||
Sbjct 39944 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTTTGAC 39891
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || || | ||| | ||| | |||| || ||| || || || |||||||| |
Sbjct 40352 ACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGA 40293
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || |||||||| ||||| || ||||| | ||||||||||| ||
Sbjct 40292 GAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGG 40233
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || || ||| ||| || || | || | | || ||||| | |||||
Sbjct 40232 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCAC 40173
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 40172 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125
>seq15599
Length=40940
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
||||||| | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 36058 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35999
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 35998 TACTAACGAGGA 35987
>seq12518
Length=54009
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 35247 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 35306
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 35307 ATACTAACGAGGA 35319
>seq7134
Length=91468
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 77712 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 77653
Query 57067 TACTACCGAGGATTG 57081
||||| |||||| ||
Sbjct 77652 TACTAACGAGGACTG 77638
>seq12135
Length=56136
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 15985 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15926
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 15925 TACTAACGAGGA 15914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542582863276480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |