Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7134 96.9 3e-15 seq66 91.5 1e-13 >seq7134 Length=91468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || || ||||| Sbjct 87201 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCG 87142 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 87141 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 87082 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 87081 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 87022 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || ||||||| || || || || ||||||||| Sbjct 87021 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 86986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| || || ||||| || || ||||| ||| || Sbjct 87423 ACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 87364 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || |||||| | |||||| || || || ||||||||||| || | Sbjct 87363 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCATGG 87304 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | ||| || || | ||| | || || Sbjct 87303 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 87244 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||| || || || || ||||||||| Sbjct 87243 CCGGTCAAGGTCTTCACGAAGATCTGCATG 87214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| Sbjct 86745 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCG 86686 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || ||||||| | |||||| || || || |||||||||||| Sbjct 86685 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 86626 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 86625 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 86566 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || ||||||| || || || || ||||||||| Sbjct 86565 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 86530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| Sbjct 86973 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCG 86914 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || ||||||| | |||||| || || || |||||||||||| Sbjct 86913 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 86854 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 86853 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 86794 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || ||||||| || || || || ||||||||| Sbjct 86793 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 86758 >seq66 Length=542294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||| || || || ||||| || || ||| | ||| || Sbjct 261613 ACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAACAGAGTGTGTCCATCTTCC 261672 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || ||||| ||||||| | |||||| || || || ||||||||||| || | Sbjct 261673 AACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCTTGG 261732 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | ||| || || | ||| | || || Sbjct 261733 ATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 261792 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||| || || ||||| ||||||||| Sbjct 261793 CCGGTCAGGGTCTTCACAAAGATCTGCATG 261822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474949385497280