Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1509 154 2e-32 seq7786 109 8e-19 >seq1509 Length=219255 Score = 154 bits (170), Expect = 2e-32 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || || || |||||||| | || | || | ||| Sbjct 164438 AAAGGACAGCCCTTCACATTCTTGCAGATAAGAGACTGAATTGAGGCAGCGTTGATGATT 164379 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || ||||||||| | || || || ||| Sbjct 164378 TTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAACATATGGGA 164319 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||| ||| || || || || || || | ||| ||||||| || Sbjct 164318 TTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAA 164259 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || || || ||||| || | | | ||| || || || | || || | | Sbjct 164258 ATGGCATCTGGGCGAGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCAATG 164199 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| ||||| ||||| ||||| || |||||||| ||| Sbjct 164198 TCACCATAGAGAGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCT 164154 Score = 134 bits (148), Expect = 2e-26 Identities = 138/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCAT-ATCGGTCCTAA 10179 |||||||||||| |||| |||| | |||||||| ||||||||| | || ||| ||| | | Sbjct 161698 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGC-CTATGATCTGTCTTGA 161640 Query 10180 AAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGAT 10239 ||||||| ||||| ||||| || | || || || ||||||| || ||||||||||||| Sbjct 161639 AAAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGAT 161580 Query 10240 CGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 | ||||| || | |||| | || || ||| ||||| | || | ||||||| || || Sbjct 161579 CAGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACTAGCTCTTTTGAATCAGGAAG 161522 Score = 114 bits (126), Expect = 2e-20 Identities = 198/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| |||||||| || |||| | ||| || | | || Sbjct 163458 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTGAGTCCATGTCCCAGTAATATA 163399 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || |||| || || | | |||| | || |||| || Sbjct 163398 GAGTTGTTGTAGACAAACTGTTGATAGTTGTATTCCTGGTCGTCAATTTGAAAGGTGTCG 163339 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| ||||||||||| || || |||||||| |||||| Sbjct 163338 GGCAGAAGGGGATGCCAGTGGTAGAGTGTATTGAACTCAGCAGCAATTCGGTTTTGGTAC 163279 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| ||||| || | || | ||||||||| |||| Sbjct 163278 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCGAACTTCAGTTTGAAGTGGTAGCCGC 163221 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || || ||||| | | || | ||| ||||| ||||| || Sbjct 163220 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATAGTTTCTCC 163175 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||| || || ||||| |||| ||| ||| Sbjct 161093 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 161034 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 161033 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 160974 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || ||| |||||| | || |||||| Sbjct 160973 GGTGGGCTGGCAATCAAATGTGATCTGGCT 160944 >seq7786 Length=85644 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || ||||| || || |||| || || | || || || || ||||| || ||||||||| Sbjct 27098 GTGGCGGTCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAGTAC 27039 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| ||| ||| || || | |||||| || ||||| | || Sbjct 27038 TCTGGAGAACAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATTTCT 26979 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | ||| |||| || | |||| | ||| Sbjct 26978 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGA-GAAGCAGCCCCGGGTA 26920 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | ||| || | ||| ||||| || | |||| || | || ||||||||||| Sbjct 26919 GAACTCCAAAGCATCAATGTCTCCATATAGATCCTCCAGTTCAGTTGCCATCTCCTTCTC 26860 Query 9172 ACCTACAAG 9180 ||||| || Sbjct 26859 TCCTACGAG 26851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722888728824800