Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1509 154 2e-32
seq7786 109 8e-19
>seq1509
Length=219255
Score = 154 bits (170), Expect = 2e-32
Identities = 205/285 (72%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| ||||||||||| || || || |||||||| | || | || | |||
Sbjct 164438 AAAGGACAGCCCTTCACATTCTTGCAGATAAGAGACTGAATTGAGGCAGCGTTGATGATT 164379
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| |||||||| || || || || ||||| || ||||||||| | || || || |||
Sbjct 164378 TTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAACATATGGGA 164319
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||| ||| || || || || || || | ||| ||||||| ||
Sbjct 164318 TTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAA 164259
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | || || || ||||| || | | | ||| || || || | || || | |
Sbjct 164258 ATGGCATCTGGGCGAGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCAATG 164199
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| |||||||| ||||| ||||| ||||| || |||||||| |||
Sbjct 164198 TCACCATAGAGAGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCT 164154
Score = 134 bits (148), Expect = 2e-26
Identities = 138/178 (78%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCAT-ATCGGTCCTAA 10179
|||||||||||| |||| |||| | |||||||| ||||||||| | || ||| ||| | |
Sbjct 161698 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGC-CTATGATCTGTCTTGA 161640
Query 10180 AAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGAT 10239
||||||| ||||| ||||| || | || || || ||||||| || |||||||||||||
Sbjct 161639 AAAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGAT 161580
Query 10240 CGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
| ||||| || | |||| | || || ||| ||||| | || | ||||||| || ||
Sbjct 161579 CAGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACTAGCTCTTTTGAATCAGGAAG 161522
Score = 114 bits (126), Expect = 2e-20
Identities = 198/286 (69%), Gaps = 4/286 (1%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| |||||||| || |||| | ||| || | | ||
Sbjct 163458 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTGAGTCCATGTCCCAGTAATATA 163399
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| || || |||| || || | | |||| | || |||| ||
Sbjct 163398 GAGTTGTTGTAGACAAACTGTTGATAGTTGTATTCCTGGTCGTCAATTTGAAAGGTGTCG 163339
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| ||||||||||| || || |||||||| ||||||
Sbjct 163338 GGCAGAAGGGGATGCCAGTGGTAGAGTGTATTGAACTCAGCAGCAATTCGGTTTTGGTAC 163279
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | ||| ||||| || | || | ||||||||| ||||
Sbjct 163278 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCGAACTTCAGTTTGAAGTGGTAGCCGC 163221
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | || || ||||| | | || | ||| ||||| ||||| ||
Sbjct 163220 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATAGTTTCTCC 163175
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||| || || ||||| |||| ||| |||
Sbjct 161093 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 161034
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| ||||| ||||| ||||||||||| ||||||||||| | | |||||
Sbjct 161033 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 160974
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| || ||| |||||| | || ||||||
Sbjct 160973 GGTGGGCTGGCAATCAAATGTGATCTGGCT 160944
>seq7786
Length=85644
Score = 109 bits (120), Expect = 8e-19
Identities = 175/249 (70%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| ||||| || || |||| || || | || || || || ||||| || |||||||||
Sbjct 27098 GTGGCGGTCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAGTAC 27039
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || |||||| |||| ||| ||| || || | |||||| || ||||| | ||
Sbjct 27038 TCTGGAGAACAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATTTCT 26979
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | ||| |||| || | |||| | |||
Sbjct 26978 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGA-GAAGCAGCCCCGGGTA 26920
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | ||| || | ||| ||||| || | |||| || | || |||||||||||
Sbjct 26919 GAACTCCAAAGCATCAATGTCTCCATATAGATCCTCCAGTTCAGTTGCCATCTCCTTCTC 26860
Query 9172 ACCTACAAG 9180
||||| ||
Sbjct 26859 TCCTACGAG 26851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722888728824800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |