Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4400 131 4e-25 seq7134 118 2e-21 seq19008 96.9 8e-15 seq11308 93.3 1e-13 seq66 93.3 1e-13 seq11706 86.0 1e-11 seq11363 84.2 5e-11 >seq4400 Length=129001 Score = 131 bits (144), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || |||||||| || |||| |||||| || | | ||| | ||||| Sbjct 40108 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40049 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 40048 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 39989 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 39988 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 39929 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || ||||| || ||||| || || || |||||| Sbjct 39928 TTGCCGGTGAGGGTCTTCACGAAGATCTG---CATTTT 39894 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || |||||||| || |||| |||||| || | | ||| | ||||| Sbjct 40565 CAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATC 40506 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| || Sbjct 40505 CTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTTATC 40446 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| ||| || | | || || |||| ||||| || Sbjct 40445 CTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGT 40386 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 40385 CTTGCCGGTGAGGGTCTTCACGAAGATCTG 40356 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || |||||||| || |||| |||||| || | | ||| | ||||| Sbjct 40336 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40277 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 40276 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 40217 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 40216 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 40157 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 40156 TTGCCGGTGAGGGTCTTCACGAAGATCTG 40128 >seq7134 Length=91468 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||||| || ||| | || || Sbjct 86515 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86456 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || ||| || Sbjct 86455 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTC 86396 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 86395 TTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86336 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | ||||| || || || || Sbjct 86335 CTTACCGGTCAACGTTTTTACGAAGATCTG 86306 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || ||| | || || Sbjct 86743 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86684 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| | | ||||||||| || || || || || Sbjct 86683 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 86624 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 86623 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86564 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || ||||| || || || Sbjct 86563 CTTACCGGTCAAGGTCTTCACGAAGATCTG 86534 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || ||| | || || Sbjct 86971 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86912 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| | | ||||||||| || || || || || Sbjct 86911 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 86852 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 86851 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86792 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || ||||| || || || Sbjct 86791 CTTACCGGTCAAGGTCTTCACGAAGATCTG 86762 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || ||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 87426 AGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 87367 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || | ||||||||| || || || || || Sbjct 87366 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCA 87307 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 87306 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 87247 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 87246 TTACCGGTCAAGGTCTTCACGAAGATCTG 87218 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||||| || ||| | || || Sbjct 87199 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 87140 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 87139 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 87080 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 87079 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 87020 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || ||||| || || || Sbjct 87019 CTTACCGGTCAAGGTCTTCACGAAGATCTG 86990 >seq19008 Length=48258 Score = 96.9 bits (106), Expect = 8e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||| ||||| |||||||| ||| | ||||||||||| | ||||||||||| |||||| Sbjct 12709 CGAAATCTCAACACAAGGTGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 12650 Query 199469 CTTCCATCTTCCAGCTGCTTTCC 199491 | |||||||||||||||||| || Sbjct 12649 CATCCATCTTCCAGCTGCTTGCC 12627 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200947 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 201006 || |||||| ||||||||||| | |||||| | || |||||| | || || ||||||| | Sbjct 12627 GGCAAGCAGCTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTATT 12686 Query 201007 CTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||| |||||| |||| Sbjct 12687 CTTCACCTTGTGTTGAGATTTCG 12709 >seq11308 Length=60846 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| |||| || ||||| ||||||||||| | ||||||||| | ||||| | Sbjct 52890 AGTCTCAATGCAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA-AAAGTATGT 52832 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||| |||||||||||| || || ||||| || | ||||| || ||| |||||||| Sbjct 52831 CCATTTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 52774 >seq66 Length=542294 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || |||| | |||| |||||||||| || ||| ||||||| Sbjct 261610 AGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAACAGAGTGTGTCCATCT 261669 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| | | ||||||||| || || || || || Sbjct 261670 TCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCT 261729 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 261730 TGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 261789 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || Sbjct 261790 TTACCGGTCAGGGTCTTCACAAAGATCTG 261818 >seq11706 Length=58367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||| | | ||| || | || ||||||||||| | ||||||||||| |||||| Sbjct 34767 AAGTCTGAATATAAGATGAAAAGCAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATG 34708 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCT----GCTGGTCCGGAAAAATTC 199526 |||||||||||||| || || || ||||| || | | ||| | ||| ||||| Sbjct 34707 TCCATCTTCCAGCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTTAGGAGGAATTC 34648 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| ||||||||||| || || ||| ||||| | ||| || || | Sbjct 34647 CTTCCTTATCCTGAATCTTGGTTTTTAC-ATTTCTGTTGTGTCCAAGGGTTCAACCTCGA 34589 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||||| ||||| || Sbjct 34588 GAGTGATGGTCTTCCCGGTAAGGGTTTTCATGAAAATCTG 34549 >seq11363 Length=60480 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | ||||||||||||||| || || || |||| Sbjct 1631 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGTTTGCCAGCAAAGA 1690 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||| || ||| ||||||| Sbjct 1691 TCAGTCTTTGCTGATCAGGAGGAATTCCT 1719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177520285155724