Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1881 188 3e-42 seq17588 140 1e-27 seq3881 114 5e-20 seq13417 105 3e-17 seq8290 89.7 2e-12 seq773 86.0 2e-11 >seq1881 Length=198091 Score = 188 bits (208), Expect = 3e-42 Identities = 462/693 (67%), Gaps = 13/693 (2%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| ||||||||||| ||||||| || ||||| ||||| | ||| | || || || | Sbjct 78964 TTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGG 79023 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 |||| || || ||||| || ||| ||||| || || | || ||||| ||| Sbjct 79024 AAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTTGCCTTTACTGATA 79083 Query 451038 CAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACACA 451096 | ||| || | | || | ||||| || | | | | | | | || ||| ||||| Sbjct 79084 CCGAATGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATGAACC-CCACTAACACG 79142 Query 451097 GTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAG 451156 || | |||||| || ||| | || || |||| | |||||||| | ||| ||| ||| Sbjct 79143 GTTTTTGATGCCAAGCGTCTTATAGGACGTAGATTTGATGATGCTGTTGTCCAATCAGAT 79202 Query 451157 AAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGT 451212 | || ||| | ||| ||| || || ||| | ||| | |||| | | ||||| Sbjct 79203 ATGAAGCATTGGCCCTTC--ATGGTG--GTGAATGATGCAGGCAGGCCCAAGGTCCAAGT 79258 Query 451213 AAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTAC 451272 | || || || || || |||| ||| ||| || || | |||||||||||| | || Sbjct 79259 GGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCATCTATGGTTTTGAC 79318 Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 |||||||| |||| |||||| ||| | || | ||||| |||| || | || Sbjct 79319 AAAAATGAAGGAAATTGCAGAAGCTTATCTAGGGAAGACTGTTACCAATGCTGTTGTCAC 79378 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 ||| || |||||||||||||| | || | || ||||| |||||||| ||| |||||| Sbjct 79379 TGTACCTGCTTATTTCAATGACTCTCAGCATCAGGCAACCAAAGATGCTGGAACTATTGC 79438 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 |||| | ||||| || | || || ||||| || || || |||||| || ||||| | Sbjct 79439 TGGTCTCAATGTACTCAGGATCATCAATGAGCCAACTGCTGCTGCTACTGCTTATGGCTT 79498 Query 451453 AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 || || ||| | || |||| || | | | ||||| || || || || || Sbjct 79499 AGACAA---AAAGGTTGGAGCTGAAAGGAACGTGCTTATCTTTGACTTAGGAGGTGGCAC 79555 Query 451513 TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGG 451572 | |||| || | || | ||||||||||| | ||||| || || | || ||| Sbjct 79556 TTTTGATGTGTCCATCCTCACTATTGAAGATGGAATCTTTGAGGTCAAATCTACAGCTGG 79615 Query 451573 TGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || |||| || |||||| |||| || Sbjct 79616 AGACACCCACTTAGGTGGAGAAGATTTTGACAA 79648 >seq17588 Length=70272 Score = 140 bits (154), Expect = 1e-27 Identities = 261/382 (68%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| ||||| |||| | ||||| ||| |||||||| |||| |||||| | ||| Sbjct 32849 CTCCACAAGAACTTTCTGCAATGGTACTTCAAAAAATGAAGCAAACTGCAGAAGACTATT 32790 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || ||| || || || |||||||| ||||| || |||||| || |||||| Sbjct 32789 TAGGACAAGAAGTAACAGAGGCTGTAATTACAGTTCCTGCATATTTCTCAGACTCACAAC 32730 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || ||||| || || || ||||| ||| | | || || |||||||| | Sbjct 32729 GTCAAGCTACAAAAGAGGCTGGTCAAATTGCAGGTCTTGAGGTGAAACGTATTATTAACG 32670 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 ||||||| || |||||||| || || || | | ||||||| | || ||| ||| Sbjct 32669 AACCTACTGCTGCTGCTCTTGCTTACGGTGTTGAAAAATCAGATCAAG-AGATGAAGG-- 32613 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 || || ||||| ||||||| || ||| ||||| || | || ||| | Sbjct 32612 ---TTGCTGTGTTTGACCTTGGTGGTGGTACTTTTGATATCTCAATTCTAGACTTTGGTG 32556 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 | || || |||||||| | || |||||||||||||| |||| || || ||| ||| Sbjct 32555 ACGGTGTGTTTGAAGTTCTATCTACTAATGGTGATACTCACTTAGGTGGAGATGATTTTG 32496 Query 451602 ATAATGCAATTGTGGAATGGTT 451623 | | | ||| | || ||||| Sbjct 32495 ACCAAGTTATTATTGACTGGTT 32474 Score = 91.5 bits (100), Expect = 6e-13 Identities = 243/370 (66%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 451988 GTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT 452047 || || || ||||| | ||||| | |||||||| || |||| ||| || |||| Sbjct 32097 GTTAACCCAGATGAGGTAGTTGCTTTAGGTGCTGCTGTACAAGGTGCTGTTTTAAC---- 32042 Query 452048 TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 ||| |||| ||| | | |||| |||| ||||||| ||||| || | || Sbjct 32041 -----TGACGAAATTAAAGGTGTTGTTCTATTAG---ATGTAACTCCTCTTTCATTAGGT 31990 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167 |||| ||| ||||| | |||||||| | ||| | ||| ||||||||||| Sbjct 31989 ATTGAGACACTAGGTGGTGTAATGACTAAACTTATTGATGCTAACACTACTATTCCTTGT 31930 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 || || | |||| || ||||| ||||||||| ||| ||||| ||||| ||| Sbjct 31929 AAGAAAGCTGAAACTTTCTCAACAGCGGCAGATAACCAAACAGAGGTAACAATTCATGTG 31870 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTA--GGAGAATTTACTCTTT 452285 || |||| ||| | ||||| | | |||| |||||| || | || | || Sbjct 31869 CTTCAAGGTGAAAGACCAATGGCCAACCAAAATA--AAACTATTGGTAATTTCAACCTAA 31812 Query 452286 CAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATG 452345 || ||| ||||| | | || | ||||||||||||| | | | |||| |||||| Sbjct 31811 CAGGTATTGCTCCTGCACAGCGTGGTATTCCTCAAATTGAAGTAAGTTTTGATATTGATG 31752 Query 452346 CAAATGGTAT 452355 | || ||||| Sbjct 31751 CTAACGGTAT 31742 >seq3881 Length=138185 Score = 114 bits (126), Expect = 5e-20 Identities = 198/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || ||||| || || ||||||||||| ||||| | || |||||||| |||| Sbjct 63912 ATGCTGTGATCACTGTGCCAGCCTATTTCAATGACTCACAATGACAGGCAACTAAGGATG 63971 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| ||||| ||| | ||||| || ||||||| ||||| || ||||| ||||| Sbjct 63972 CAGGCGTGATTGCAGGTCTCAATGTGCTAAGAATTATCAATGAGCCCACAGCTGCTGCCA 64031 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || ||||| ||| ||| | || | ||| | || | | | ||||| Sbjct 64032 TTGCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCCTGATCTTTGACC 64088 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 |||||||||| || |||| || | || | || || |||||| | ||||| |||| Sbjct 64089 TTGGTGGAGGCACATTTGATGTGTCCATCCTCACCATAGATGATGGGATTTTTGAGGTAA 64148 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||| || ||| || || || || || || || || |||| ||| Sbjct 64149 AGGCCACAGCTGGGGACACCCACCTGGGTGGAGAGGACTTTGACAAT 64195 >seq13417 Length=55113 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 20620 GTTACCCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCTCAACGCCAGGCAACC 20561 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | | || || ||||| || Sbjct 20560 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATAATCAATGAGCC 20508 >seq8290 Length=81352 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||| Sbjct 75783 CAGGCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTGATTAATGAA 75724 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 75723 CCCACAGCTGCTGCTCTGGCCTATGGCCTAGACAAATCAGAAGA 75680 >seq773 Length=283014 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/246 (68%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 96048 ATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA-- 96105 ||||||| | |||||||||||| || || || ||||| ||| || | || | || Sbjct 140300 ATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAAT 140357 Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 ||||||||| |||||| ||| |||| || || ||| | | ||| |||||| | Sbjct 140358 GGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAG 140417 Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225 |||||| || || | ||||||||||||||||||| || ||||| || | Sbjct 140418 ACAAATGCTGCCATTACTGTTAATATTTGGATGATAAAT---TCTTGTAAATGCAACCTC 140474 Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTC 96285 ||| || || | || |||||| ||||||| |||| || |||||| || || | Sbjct 140475 AGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTG 140534 Query 96286 ATAGGG 96291 ||| || Sbjct 140535 ATATGG 140540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973369979611376