Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1881 295 5e-74 seq17588 143 2e-28 seq13417 93.3 3e-13 seq7632 89.7 4e-12 >seq1881 Length=198091 Score = 295 bits (326), Expect = 5e-74 Identities = 973/1502 (65%), Gaps = 23/1502 (2%) Strand=Plus/Minus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 ||||| ||||| || || || ||| ||| |||||| | |||| ||||| || Sbjct 80449 TTAGTGATAGTGATCTTGTTCTCTTTTCCTGTACTCTTATCAACAGCAGAGACATTGAGG 80390 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || ||||||||||| ||||| ||||||||||| ||||| || || | | ||| || Sbjct 80389 ATGCCATTGGCATCAGTGTCAAAAGTGACTTCAATCTGAGGAACACCACGGGGGGCAAGT 80330 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || ||| | | || | || || || ||||| | || | | ||| Sbjct 80329 GGTATGCCTGTGAGTTCGAACTTGCCAAGCAGGTTGTTATCCCTGGTCATGGCATGCTCA 80270 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || || ||| || || || ||| || || || || || || || || | Sbjct 80269 CCTTCATAAACCTGAATGAGCACACCAGGCTGGTTGTCAGAGTAGGTAGTGAAGGTTTGT 80210 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | || |||||| ||||| || | | || | ||||| | ||||| || Sbjct 80209 GTCTGCTTGGTAGGAATGGTTGTATTGCGCTTGATGAGGACTGTCATGACCCCACCAGCA 80150 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 ||||| | |||||| ||||||||||||||||| | || | | || ||||| |||||| Sbjct 80149 GTTTCAATACCAAGGGAAAGAGGAGTGACATCTAACAGCAGCAAATCTTGAACATTTTCA 80090 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | | ||| ||||| ||||| || | ||| |||||||| |||||||| |||||| Sbjct 80089 GATTTGTCTCCAGACAGAATGGCTGCCTGGACAGCTGCACCATAAGCAACAGCCTCATCA 80030 Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC- 517692 || || | | | ||| |||| ||| |||||||| || | ||||||| ||| | Sbjct 80029 GGGTTGATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCCTGCAGAAGTT-TCTGAAT 79971 Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 ||| || || || | || || || |||| ||||| ||||| | ||| || || || || Sbjct 79970 CTTGGGGATTCGGGTAGAACCACCTACTAGGACAATATCATGGATCTGGGACTTGTCTAG 79911 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812 || | |||| | |||| || ||||| || || | | || | ||| | | Sbjct 79910 CTTAGCATCCTGCAGGGCTTTCTCTACGGGATCCAGGGTGCCACAGAATAGGTCAGCATT 79851 Query 517813 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGA 517872 |||||||| || | || | |||| | | || ||||||||||||| | | || Sbjct 79850 GAGTTCTTCAAACCTGGCACGGGTAATGGAGGTATAGAAATCAATTCCTTCATAGAGTGA 79791 Query 517873 ATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC--GTTCACAT 517930 |||| ||||| | | || || || || |||| ||||||| | || || | Sbjct 79790 GTCAATCTCAATACTGGCCTGGGTAATGGAGGAGAGTGTGCGTTTAGAAGCAGTACAGAG 79731 Query 517931 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTC 517990 | | || | || || | || | |||| || | |||| || | | Sbjct 79730 ACAATGGACAGCCCTC-------TTGTTCTCACTGATG----TCCTTCTTATGCTTGCGC 79682 Query 517991 TTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATT 518048 ||||| || ||| | ||| | || | || || ||||||||||| || || || | Sbjct 79681 TTGAACTCGGCAATGAA--ATGGTTGACCATTCGGTTGTCAAAATCTTCTCCACCTAAGT 79624 Query 518049 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTA 518108 || | ||| | |||| | | || | || | ||||||||||| || | | | | Sbjct 79623 GGGTGTCTCCAGCTGTAGATTTGACCTCAAAGATTCCATCTTCAATAGTGAGGATGGACA 79564 Query 518109 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 518168 ||||| || ||||| || | ||||| ||||| || ||| |||| | |||| Sbjct 79563 CATCAAAAGTGCCACCTCCTAAGTCAAAGATAAGCACGTTCCTTTCAGCTCCAACCTTTT 79504 Query 518169 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 518228 | || | ||||| ||| ||||||||||||||| ||||| || || || | ||||| | Sbjct 79503 TGTCTAAGCCATAAGCAGTAGCAGCAGCAGTTGGCTCATTGATGATCCTGAGTACATTGA 79444 Query 518229 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 518288 |||||||||| |||| |||||||| || || || || || || || ||||| |||| Sbjct 79443 GACCAGCAATAGTTCCAGCATCTTTGGTTGCCTGATGCTGAGAGTCATTGAAATAAGCAG 79384 Query 518289 GAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCA 518348 | ||||| | ||| |||| || || || || | |||||| ||| ||| |||| Sbjct 79383 GTACAGTGACAACAGCATTGGTAACAGTCTTCCCTAGATAAGCTTCTGCAATTTCCTTCA 79324 Query 518349 TTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA-ATATTGCTTGGATTCATTTTGA 518407 |||| | |||| ||| ||||| | | ||||| | | | | ||| | ||| Sbjct 79323 TTTTTGTCAAAACCATAGATGACACCTCCTCTGGATAGAAACTTTTTGTCTCTCCCTTG- 79265 Query 518408 TATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTC 518467 ||| |||| | | || | || |||| | || | || ||||| | ||| Sbjct 79264 TATTCCACTTGGACCTTGGGCCTGCCTGCATCATTCACCACCATGAAGGGCCAATGCTTC 79205 Query 518468 ATATCTGATTGAACACTTTGGTCATTAAAATCT-CTACCAATTAATCGTTTTGCATCAAA 518526 ||||||||||| ||| ||| | |||||| | || || | || || |||||||| Sbjct 79204 ATATCTGATTGGACAACAGCATCA-TCAAATCTACGTCCTATAAGACGCTTGGCATCAAA 79146 Query 518527 AATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTC 518586 || || || || || || |||||| |||| | || || ||||| || |||| ||| Sbjct 79145 AACCGTGTTAGTGGGGTTCATTGCAACTTGGTTCTTTGCAGCATCACCGATCAATCATTC 79086 Query 518587 TGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAAT 518646 || || ||||| | |||||| ||| || || || || || |||||||| ||||| || Sbjct 79085 GGTATCAGTAAAGGCAACATAACTTGGGGTGGTTCGGTTTCCCTGATCATTGGCAATTAT 79026 Query 518647 TTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 518706 ||| ||||| || | || | ||||| |||||| | || || || | |||||| || Sbjct 79025 TTCCACTTTCCCGTGCTGGAAGACACCCACACAAGAGTAGGTGGTGCCAAGATCAATGCC 78966 Query 518707 AA 518708 || Sbjct 78965 AA 78964 >seq17588 Length=70272 Score = 143 bits (158), Expect = 2e-28 Identities = 195/268 (73%), Gaps = 7/268 (3%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || |||||||| | ||||| | | || ||||| |||| ||| | |||| |||| | Sbjct 32585 GTACCACCACCAAGGTCAAACACAGCAACCTTCATCTCTTGATCT--GATTTT-TCAACA 32641 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| |||||||||||| ||||| |||||||| | || | |||||| ||| Sbjct 32642 CCGTAAGCAAGAGCAGCAGCAGTAGGTTCGTTAATAATACGTTTCACCTCAAGACCTGCA 32701 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| || || ||||| || ||||| | |||||| || |||||||||||||| ||| Sbjct 32702 ATTTGACCAGCCTCTTTTGTAGCTTGACGTTGTGAGTCTGAGAAATATGCAGGAACTGTA 32761 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 || || || || |||||||||| || | ||| | ||| ||||| |||||||| || Sbjct 32762 ATTACAGCCTCTGTTACTTCTTGTCCTAAATAGTCTTCTGCAGTTTGCTTCATTTT--TT 32819 Query 518357 AAA--ATCATTGATGAAATTTGTTCTGG 518382 || | ||||| |||| || || ||| Sbjct 32820 GAAGTACCATTGCAGAAAGTTCTTGTGG 32847 Score = 129 bits (142), Expect = 4e-24 Identities = 323/491 (66%), Gaps = 15/491 (3%) Strand=Plus/Plus Query 517243 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 ||| | |||||| |||| ||| | | ||||| || ||||| | |||||| | || Sbjct 31711 TGTCGCTTTATCTTTCGCAGAAACACTCAAGATACCGTTAGCATCAATATCAAAACTTAC 31770 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 517362 |||||||||||| | || | ||| ||||| | || ||| | || || | || | Sbjct 31771 TTCAATTTGAGGAATACCACGCTGTGCAGGAGCAATACCTGTTAGGTTGAAATTACCAAT 31830 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 | | ||||| | || | | | || |||||| | | | || || || || | || Sbjct 31831 AGTTTTATTTTGGTTGGCCATTGGTCTTTCACCTTGAAGCACATGAATTGTTACCTCTGT 31890 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 517482 ||| ||||||| |||| || | | ||| ||||||||||| || ||||| Sbjct 31891 TTGGTTATCTGCCGCTGTTGAGAAAGTTTCAGCTTTCTTACAAGGAATAGTAGTGTTAGC 31950 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 |||||||| || ||||| | ||||||| ||| || | ||| | ||||||||||| || Sbjct 31951 ATCAATAAGTTTAGTCATTACACCACCTAGTGTCTCAATACCTAATGAAAGAGGAGTTAC 32010 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 ||| | ||| |||| | || || |||| |||||| | || ||| |||| Sbjct 32011 ATCTAATAGAACAACACCTTTAA---TTTCGTCAGTT---------AAAACAGCACCTTG 32058 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 517662 | ||||||||| | ||||| | ||||| || |||||| || | | |||||| Sbjct 32059 TACAGCAGCACCTAAAGCAACTACCTCATCTGGGTTAACACCTTTAGAAGGAGCTTTACC 32118 Query 517663 ATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 | || || | | | || || | ||| ||||||||||| ||| || |||||||| Sbjct 32119 A---AAGAAGTCTTCTACAACTTTTTGTACAGCAGGAATACGAGTTGAACCACCAACTAA 32175 Query 517723 TACAATTTCAT 517733 | | ||||| Sbjct 32176 GATTACTTCAT 32186 >seq13417 Length=55113 Score = 93.3 bits (102), Expect = 3e-13 Identities = 206/307 (67%), Gaps = 18/307 (6%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTCAAATT 517157 |||| ||||||||| ||| ||||| | || ||| || ||| | || |||| | Sbjct 18447 TTTCCAATTCATTTCTAGTATCAATGCGTTCCTTGAGCTTTTTGTCTTCCTCGGCAAACT 18506 Query 517158 CTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT----- 517212 | ||| || ||| ||| || ||||||| |||||| | || |||||| Sbjct 18507 TCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTTAGGCGATTTTGGT 18560 Query 517213 -ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 517268 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 18561 CATTGGTAATGGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCCGTCACGC 18617 Query 517269 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 517328 |||||| ||||| |||| | ||||| ||||||||||| || || ||||| | ||| Sbjct 18618 GAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGAACCCCACGAGGAG 18677 Query 517329 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 517388 |||| || || || || || ||| ||||||||| | ||| ||||| || | || Sbjct 18678 CAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTCGTCAGGGGTC 18737 Query 517389 GTTCACC 517395 ||||||| Sbjct 18738 GTTCACC 18744 >seq7632 Length=204648 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 83677 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 83736 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| || || || || ||||||||||| || ||||||| Sbjct 83737 ATGGTGCTCCTAAGGAAATGGAATCATACTACCAGGAGATTGGTAGAGCTGGCCGTGATG 83796 Query 367118 GA 367119 || Sbjct 83797 GA 83798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776218747769032