Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq22040 150 2e-31 >seq22040 Length=22008 Score = 150 bits (166), Expect = 2e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 154875 ATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAG 154934 |||||||| || ||||||||||||||| | ||||| || || || | |||| ||||| Sbjct 18173 ATGATTACTTATCCATCTACACATGGTATTTTTGAGACCAATATACGCGAGATGTGTAAC 18114 Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 | | || || ||| | || || || | ||||| |||||| | ||||| || ||| Sbjct 18113 TTAATACACGAAGCTGGAGCACAAGTGTACATGGATGGTGCAAATATGAATGCCCAAGTA 18054 Query 154995 GGACTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAAC 155053 ||||| |||| || || ||| || ||||| |||||||| || ||| ||||||| || Sbjct 18053 GGACTTACAAATCC-TGGCTTTATCGGAGCAGACGTATGTCACCTTAACCTACATAAGAC 17995 Query 155054 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACA 155113 || |||||| ||||| ||||| || ||||| ||||||||||| | ||||||||||| Sbjct 17994 CTTTGCTATTCCTCATGGTGGTGGTGGCCCTGGTGTAGGTCCTATTTGCGTAGCAAAACA 17935 Score = 113 bits (124), Expect = 5e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCAT-ACAGCGAAACGTTCTTGA 153265 || |||||||| | |||||||| ||||| || |||| || ||| ||||| || | | Sbjct 19877 ATTGGTCAAGGTTGGTATGGAACAATTACTCCGGCAGTTATTACA-CGAAATGTATTCCA 19819 Query 153266 GAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATT 153325 |||||| |||||| || || |||||||| ||||||| || |||| || || || | Sbjct 19818 AAATCCTGTTTGGTATACGTCATACACTCCGTATCAAGGAGAAGTATCGCAAGGTAGGCT 19759 Query 153326 GGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAA 153385 || || ||| | |||| ||||||| || | || | |||||| | ||| || | || Sbjct 19758 CGAGGCCTTAATGAATTTCCAAACGGCTATTTCTGATTTAACAGGACTTCCACTATCCAA 19699 Query 153386 CGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG-CTAT 153432 | || || ||||||||||||| || | |||||| || ||| |||| Sbjct 19698 CTGTTCATTACTAGATGAAGCAACAGCTGGAGCAGAGGCTATGACTAT 19651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578541115876480