Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7134 147 5e-30 seq4400 129 1e-24 seq11308 109 1e-18 >seq7134 Length=91468 Score = 147 bits (162), Expect = 5e-30 Identities = 169/226 (75%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || ||||||||||| || || ||||| || | ||||| Sbjct 86524 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 86465 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 86464 GCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 86405 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||||| ||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 86404 CTCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 86348 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || ||||| ||||||||||| | |||||| Sbjct 86347 CAGGGTGATGGTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 86302 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || ||||||||||| || || ||||| || | ||||| Sbjct 87208 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 87149 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 87148 GCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 87089 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||| ||||| |||||||| ||| ||||| || Sbjct 87088 CTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 87032 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 87031 CAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 123 bits (136), Expect = 6e-23 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| || | ||||| | |||||||| |||||||| || Sbjct 87411 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTCCCG 87352 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || | || |||||||| || ||||| || || || || || || |||| Sbjct 87351 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCATGGATCTTGGCCTTG 87292 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || ||||| |||||||| ||| ||||| || ||||| | ||||| || ||||| Sbjct 87291 ACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAG 87235 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 87234 GTCTTCACGAAGATCTGCAT 87215 >seq4400 Length=129001 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||||| ||||| | ||||| || Sbjct 40105 ACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCC 40046 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 40045 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGG 39986 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| ||||| || ||||| || ||||| | ||||| Sbjct 39985 ATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 39926 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | || || ||||| | ||||||| Sbjct 39925 CCGGTGAGGGTCTTCACGAAGATCTGCATTT 39895 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||||| ||||| | ||||| || Sbjct 40561 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCC 40502 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||||||||| ||||||||||| || || Sbjct 40501 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCCTGG 40442 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| ||||| || ||||| || ||||| | ||||| Sbjct 40441 ATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 40382 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 40381 CCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||||| ||||| | ||||| || Sbjct 40333 ACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCC 40274 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 40273 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGG 40214 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| ||||| || ||||| || ||||| | ||||| Sbjct 40213 ATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 40154 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 40153 CCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 >seq11308 Length=60846 Score = 109 bits (120), Expect = 1e-18 Identities = 100/125 (80%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||||||| |||| |||||||||||||| |||||||| ||||| |||| || ||| Sbjct 52894 TCAGAGTCTCAATGCAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGG-AAAAGT 52836 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||| ||| |||||||| || || ||||| |||| ||| || || |||||||| || Sbjct 52835 ATGTCCATTTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCC 52776 Query 195039 TTCTT 195043 || || Sbjct 52775 TTTTT 52771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108162824404124