Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7134 123 2e-23 seq66 104 2e-17 seq4400 91.5 1e-13 >seq7134 Length=91468 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||||| | ||| |||||||| ||||| ||||| || Sbjct 87441 CCTCCCCTCAAGCGGAGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 87382 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| |||||||| || |||||||| || || | ||||||||| | || Sbjct 87381 AGAGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 87322 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | |||||||| || ||||| ||||| || || || | |||| || ||| | Sbjct 87321 ATGCCCTCCTTATCATGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 87264 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 87263 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || | || | || ||| Sbjct 87195 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCC 87136 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 87135 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 87076 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 87075 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 87018 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||| ||||||||||| Sbjct 87017 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | || | || ||| Sbjct 86739 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCC 86680 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 86679 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 86620 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 86619 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 86562 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||| ||||||||||| Sbjct 86561 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | || | || ||| Sbjct 86967 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCC 86908 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 86907 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 86848 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 86847 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 86790 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||| ||||||||||| Sbjct 86789 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || | || | || ||| Sbjct 86511 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCC 86452 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||| || || Sbjct 86451 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCTTGG 86392 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 86391 ATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 86332 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || ||||||||||| Sbjct 86331 CCGGTCAACGTTTTTACGAAGATCTGCAT 86303 >seq66 Length=542294 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||||||| ||| | || ||| ||||| ||||| | Sbjct 261595 CCTCCCCTCAAGCGGAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAAC 261654 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| ||| || || ||||| || | | ||||||||| | || Sbjct 261655 AGAGTGTGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 261714 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||| || ||||| ||||| || | ||||| |||| || ||| Sbjct 261715 ATGCCCTCCTTATCTTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCACTGGGCTC 261770 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 261771 CACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821 >seq4400 Length=129001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || |||||||| ||||| || || || Sbjct 40579 CCACCCCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40520 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | ||||||||| | || Sbjct 40519 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 40460 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || ||| | || | || | || ||| || Sbjct 40459 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40400 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || ||||| |||||||| |||||||||||| Sbjct 40399 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 40352 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || || | || |||| |||||||| || || ||||| Sbjct 40315 TCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 40256 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || ||| Sbjct 40255 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 40196 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || ||||| |||||||| Sbjct 40195 TCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACG 40136 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 40135 AAGATCTGCATA 40124 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || || | || |||| |||||||| || || ||||| Sbjct 40087 TCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 40028 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || ||| Sbjct 40027 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 39968 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || ||||| |||||||| Sbjct 39967 TCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACG 39908 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 39907 AAGATCTGCATTTT 39894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324266550179616