Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20608 336 2e-87 seq7358 129 7e-25 seq1625 120 3e-22 seq2665 116 4e-21 >seq20608 Length=25523 Score = 336 bits (372), Expect = 2e-87 Identities = 642/937 (69%), Gaps = 9/937 (1%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || | || || ||||| || Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGGCTTGACACCACTCCTATC 8908 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||| | | | ||||| || |||||||| ||||| || | || | || ||| Sbjct 8909 CTCCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTC 8968 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||| ||||||| ||| || | | || | || | | || | | Sbjct 8969 TCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATA 9028 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || |||| |||||| ||||| | | |||||||| || | | Sbjct 9029 AGTCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGC 9088 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908 || || || | || ||||| || || || |||||||| | || | | |||| || || Sbjct 9089 TTTACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAAT-TGATGATGAT 9147 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||||| || ||| || || || |||||||||||| || ||||| Sbjct 9148 TTCTTTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAA 9207 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| |||| || | ||||| || || | |||||| |||||||| | |||||||| Sbjct 9208 GTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCAC 9267 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||| || || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 9268 GAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 9327 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || | ||||| || || | | ||||||| | |||| || || | |||||| Sbjct 9328 CACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGG 9387 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| ||||||| ||||| |||| || | ||| || ||| | Sbjct 9388 CAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAA 9447 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | | || | | || |||| || | || || | | ||| ||||||| ||| | Sbjct 9448 TTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACG 9507 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || || || ||||| |||||||| ||||| ||||| Sbjct 9508 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTC 9567 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | ||| | || ||||| |||||||| ||||| |||||||| | |||||| || || Sbjct 9568 TTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGC 9627 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGT-TAATGTATTCCAATCATTAATAT 19447 | ||||| ||||||| | | || || || | || | | ||| | | ||| | Sbjct 9628 CAGAACATGAGATATAAAATATCTCTCCTC-AAGCTCTAGGGCTTCCCAGTGCTGAATGT 9686 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | ||||| | | | || || ||| ||| |||||| |||||||| ||| |||||||| | Sbjct 9687 CCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCT 9745 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| |||||| | |||| ||| |||| || ||||| Sbjct 9746 GCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq7358 Length=89575 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||||||| Sbjct 30172 ACCACTCTTTCTCC 30185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| || ||||| || ||||| | Sbjct 39766 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCGGCAAAGAAAGCTAAGA 39822 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421 ||| |||||||| ||| |||||||| Sbjct 39823 TATGAGAAATAAAATATTTCTCATCTGA 39850 >seq1625 Length=211188 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | ||||||||| ||||||| ||| | Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 134558 CTACCACACGTTCTCC 134573 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAAT--TCATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || | | ||| |||||||| Sbjct 132994 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGGCTCGACATCACTCCCATC 133051 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 133052 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTC 133111 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||| ||||||| ||| Sbjct 133112 TCCATAAAGTCAAACGGATTTTCTAC 133137 >seq2665 Length=168205 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || ||||| || |||| ||||| || ||||| ||||| || || Sbjct 80470 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATGGAC 80529 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 80530 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 80589 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 80590 TTTCTTATACCATA 80603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561456950530080