Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 336 2e-87
seq7358 129 7e-25
seq1625 120 3e-22
seq2665 116 4e-21
>seq20608
Length=25523
Score = 336 bits (372), Expect = 2e-87
Identities = 642/937 (69%), Gaps = 9/937 (1%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || | || || ||||| ||
Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGGCTTGACACCACTCCTATC 8908
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||| | | | ||||| || |||||||| ||||| || | || | || |||
Sbjct 8909 CTCCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTC 8968
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| ||||| ||||||| ||| || | | || | || | | || | |
Sbjct 8969 TCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATA 9028
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || |||| |||||| ||||| | | |||||||| || | |
Sbjct 9029 AGTCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGC 9088
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908
|| || || | || ||||| || || || |||||||| | || | | |||| || ||
Sbjct 9089 TTTACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAAT-TGATGATGAT 9147
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
| ||||| || ||| || || || |||||||||||| || |||||
Sbjct 9148 TTCTTTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAA 9207
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
||||| |||| || | ||||| || || | |||||| |||||||| | ||||||||
Sbjct 9208 GTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCAC 9267
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
|||||| || || | ||||||||| || ||||| || ||||||||||| || |||||
Sbjct 9268 GAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 9327
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
|| | ||||| || || | | ||||||| | |||| || || | ||||||
Sbjct 9328 CACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGG 9387
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| |||||||| |||||||| ||||||| ||||| |||| || | ||| || ||| |
Sbjct 9388 CAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAA 9447
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
| | || | | || |||| || | || || | | ||| ||||||| ||| |
Sbjct 9448 TTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACG 9507
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
|| ||||| || || || || || || || ||||| |||||||| ||||| |||||
Sbjct 9508 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTC 9567
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
| ||| | || ||||| |||||||| ||||| |||||||| | |||||| || ||
Sbjct 9568 TTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGC 9627
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGT-TAATGTATTCCAATCATTAATAT 19447
| ||||| ||||||| | | || || || | || | | ||| | | ||| |
Sbjct 9628 CAGAACATGAGATATAAAATATCTCTCCTC-AAGCTCTAGGGCTTCCCAGTGCTGAATGT 9686
Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507
| ||||| | | | || || ||| ||| |||||| |||||||| ||| |||||||| |
Sbjct 9687 CCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCT 9745
Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
||| |||||| | |||| ||| |||| || |||||
Sbjct 9746 GCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782
>seq7358
Length=89575
Score = 129 bits (142), Expect = 7e-25
Identities = 109/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| |||
Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||||||
Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||||||
Sbjct 30172 ACCACTCTTTCTCC 30185
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/88 (82%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|||||||| |||||||||||||| || ||||||||||| || ||||| || ||||| |
Sbjct 39766 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCGGCAAAGAAAGCTAAGA 39822
Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421
||| |||||||| ||| ||||||||
Sbjct 39823 TATGAGAAATAAAATATTTCTCATCTGA 39850
>seq1625
Length=211188
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| |||||||| | ||||||||| ||||||| ||| |
Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||| |
Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 134558 CTACCACACGTTCTCC 134573
Score = 96.9 bits (106), Expect = 4e-15
Identities = 110/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAAT--TCATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || | | ||| ||||||||
Sbjct 132994 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGGCTCGACATCACTCCCATC 133051
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 133052 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTC 133111
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||| ||||||| |||
Sbjct 133112 TCCATAAAGTCAAACGGATTTTCTAC 133137
>seq2665
Length=168205
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || || ||||| || |||| ||||| || ||||| ||||| || ||
Sbjct 80470 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATGGAC 80529
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 80530 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 80589
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 80590 TTTCTTATACCATA 80603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561456950530080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |